Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1152 ATGGAAAACATTGTTTCCATGCTGGATTGTGTGCCTGTAGGATTCCGATTCCGTCCCACAGATGAAGAGCTTGTGGAGTTTTACCTCAAACATAAGTTGTTGCATGATGATTTCCCTGTTCAGATCATTCCTGAGATTGACCTGTGCAAGGTGGAACCTTGGGACATACCAGCAAAATCAGTGATAAAATCCGAAGACCCAGAATGGTTTTTCTTCAGTCCTATTGATTACAAGTATTCAAATAGTAAAAGGTTTAACAGGACTACCAAACGTGGCTTTTGGAAATCCACTGGAAAAGACCGTCAGATTAAGACTAGTGGAACCAACAATATCATTGGGAGAAAGAAGACTCTTGTTTTCCATAGTGGTCGTGTCCCTACTGGTGTCAACACCAACTGGGTTATTCATGAATATCATCATGCTGTTAACTATCCTGAAAACCAGAGGACTTTTGTTTTATGTCGCTTGATTAAGAAACCAGAAAAAAAATCTGAAGGGGGAACCAATGCACTGATCTATGATCAAGGAGAGTCCAGTAGACACATGGCCTCTTCTGACCGTGAAAATTGGGCATCAGAAGTAGAATTTTCACCTCTAGGTGCTTTTCCTGACATAAATATGGAAAGAATCTTTGATGAAATACATCAGACACAGCTATTCTCCCCCCCAGTACAACAGTCTCCAATTGGTATTGATATGCAAACTTCATTTGAAACTACCGAAGAAGAAGATGATTTCTTTAATTCAATTTGGGCTCAAGAAAATATTACAAGTGAAGAAAGAAAGCATGCTTTTGTCACTAGTTCTATCCAGTCAGAGTCATTGAGAAGGGTATTCAATGAAAGCAGTGACACAGATGCTGAAGTTGTTTCTACAATGCATGGCGATATTGTGGATACGTGCGGAGTGTGTAATGAACATCCTAGTTCAAGTGAATACCATGTGTCAAAAATGTTTAAATCATCACATGGTTCTGCCCATGGTGGCGTGCATCTTCTATCTTCTGAAGCAAACAAAGAGAAAAAGGACAGGGTCATTCGAGATGATTACTGGGCAGCAGAGACATCATCTTGTGACTCGAATGGAAATAAACCTTTAGAGATCAATTGTATCGAAATTTCTAGCTCTCCTTCTACTCTAAGAAGATGGAAAACTCAACATCATCCAAGATCGGAGAACTTCATATCACAAAGAGCTGTTGCAAGAAGATCTCAAACACATCGGAAGGTTTCAAACAAAGCAGTATCCCATGTTGAGGATTTGAAATTGACTGTTGAGGAATCAGGAAAAGACCTGAAAAATGCTCAAAATTCTAGTTCAAAAGAGAATTTTCAAACCAAAAGCCATCAATCCTCTTATGTCAATAAAAAAGGTTCTTTCATCTTCTTGGAGACACCTTCATCATGCCAAAGCCTAGTTCCACGCTCGGTATATCTTGTCAATGTAGTTATAGGGATTGTGTTGCTAATAGTGATTAGTTTGGATGTATTATCATGTTAG 1500 0.39 MENIVSMLDCVPVGFRFRPTDEELVEFYLKHKLLHDDFPVQIIPEIDLCKVEPWDIPAKSVIKSEDPEWFFFSPIDYKYSNSKRFNRTTKRGFWKSTGKDRQIKTSGTNNIIGRKKTLVFHSGRVPTGVNTNWVIHEYHHAVNYPENQRTFVLCRLIKKPEKKSEGGTNALIYDQGESSRHMASSDRENWASEVEFSPLGAFPDINMERIFDEIHQTQLFSPPVQQSPIGIDMQTSFETTEEEDDFFNSIWAQENITSEERKHAFVTSSIQSESLRRVFNESSDTDAEVVSTMHGDIVDTCGVCNEHPSSSEYHVSKMFKSSHGSAHGGVHLLSSEANKEKKDRVIRDDYWAAETSSCDSNGNKPLEINCIEISSSPSTLRRWKTQHHPRSENFISQRAVARRSQTHRKVSNKAVSHVEDLKLTVEESGKDLKNAQNSSSKENFQTKSHQSSYVNKKGSFIFLETPSSCQSLVPRSVYLVNVVIGIVLLIVISLDVLSC* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1152 499 Gene3D NAC domain 20 164 IPR036093 GO:0003677|GO:0006355
Apr10g1152 499 SUPERFAMILY NAC domain 6 159 IPR036093 GO:0003677|GO:0006355
Apr10g1152 499 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 8 455 - -
Apr10g1152 499 PANTHER NAC DOMAIN-CONTAINING PROTEIN 91 8 455 - -
Apr10g1152 499 Coils Coil 418 438 - -
Apr10g1152 499 Pfam No apical meristem (NAM) protein 12 139 IPR003441 GO:0003677|GO:0006355
Apr10g1152 499 MobiDBLite consensus disorder prediction 430 450 - -
Apr10g1152 499 ProSiteProfiles NAC domain profile. 11 159 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1152 Apr-Chr10 23752497 23755909 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1152 8 166 NAC Transcription Factor Family AT4G35580 53.374 4.53e-54 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr10g1152 NAM 2.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1152 - - gsj:114390609 523.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1152 10 23752497 23755909 Apr10g1152 10 23752497 23755909 ECH