Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1150 ATGGCAAACATTGTTTCCATGCTGGATTGTGTGCCTGTAGGATTCAGATTCCGTCCCACAGATGAAGAGCTTGTAGAGTTTTACCTCAAACACAAGTTGTTGCATGATGATTTCCCTGTCCACATCATTCCTGAGATCGACCTTTGCAAGGTGGAACCTTGGGACGTACCAGCAAAATCAGTGATAAAATCCGAAGACCCAGAATGGTTTTTCTTCAGTCCTATTGATTACAAGTATTCAAATAGTAAAAGATTTAACAGGACTACGAAACGTGGCTTTTGGAAATCCACTGGAAAAGACCGTCAGATTAAGACTAGGGGAACCAACAATATCATTGGGTTCAAGAAGACTCTTGTTTTCCATAATGGTCGTGTCCCTGGTGGTGTCAAGTCCAACTGGGTTATTCATGAATATCGTCGTGCTGTTAACTTTCCTGAAAGCCAGAGGACTTTTGTTTTATGTCGCTTGATTAAGAAACCAGAAAAAAATTCTGAAGGGGGAACCAATGCACTGATCTATGATCAAGGAGAGTCCAGTAGACACATGGCCTCTTCTGACCGTGAAAATTGGGCATCAGAAGAAGAATTTTCACCTCTAGGTGCTTTCCCTGACATAAATATGGAAAGAATCTTTGATGAAATACATCAGACACCGCTATTCTCCCCCCCAGTACAACTTGATATGCAAACTCCATTTGAAACTACTGAAGAAGAAGATGATTTCTTTAATTCAATTTGGGCTCATGAAAATTTTACAAGTGAAGAAAGCAAGCATGCTTTTGTCACTAGTTCTACCCAGTCAGAGTCATTGAGAAGGGTATTCAATGAAAGCAGTGACACAGATGCTGAAGTTGTTTCTACAATGCACGGCAATATTGTGGATACTTCCGGAGTGTGTAATGAACATCCTAGTTCAAGTGAATACCATGTCTCAAAAATGTTTAAATCAGCACATGGTTCTGTCCACGGTGGCGTGCATCTTCTATCTTCTAACAATGAAGCAAACAAAGGGAAAAAGGACACTGTCATTCGAGATGATTACTGGGCAGCGGAGACATCATCTTGTGACTCGAATGGAAATAAACCTTTAGAGATCAATTGTATTGAAATTTCTAGCTCTCCTTCCACACTAAGAAGATGGAAAACTCCACATCATCCAAGATCGGAGAACTTCATATCAGCAAGAGCTGTTGCAAGAAGATCTCAAACACATCGAAAGGTTTCAAACAAAGCAGTACACCATGTTGAGGATCTGAAGGAATTGACTGTTGTGGAATCAGGAAAAGATCTGAACAATGCTCAAAATTCAAATTCGAAAGAGAATTTTCAAACTAAAAGGCATCAATCCTCTTATGTCAATAAAAAAGGTTCTTTCATCTTCTTGGAGACACCTTCATCATGCCAAAGCCTAGTACCACGCTCGGTATATCTTGTCAATGTAGTTATAGGGATTGTGTTGCTAATAGTGATTAGTTTGGATGTATTATCATGTTAG 1494 0.3969 MANIVSMLDCVPVGFRFRPTDEELVEFYLKHKLLHDDFPVHIIPEIDLCKVEPWDVPAKSVIKSEDPEWFFFSPIDYKYSNSKRFNRTTKRGFWKSTGKDRQIKTRGTNNIIGFKKTLVFHNGRVPGGVKSNWVIHEYRRAVNFPESQRTFVLCRLIKKPEKNSEGGTNALIYDQGESSRHMASSDRENWASEEEFSPLGAFPDINMERIFDEIHQTPLFSPPVQLDMQTPFETTEEEDDFFNSIWAHENFTSEESKHAFVTSSTQSESLRRVFNESSDTDAEVVSTMHGNIVDTSGVCNEHPSSSEYHVSKMFKSAHGSVHGGVHLLSSNNEANKGKKDTVIRDDYWAAETSSCDSNGNKPLEINCIEISSSPSTLRRWKTPHHPRSENFISARAVARRSQTHRKVSNKAVHHVEDLKELTVVESGKDLNNAQNSNSKENFQTKRHQSSYVNKKGSFIFLETPSSCQSLVPRSVYLVNVVIGIVLLIVISLDVLSC* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1150 497 PANTHER NAC DOMAIN-CONTAINING PROTEIN 91 8 450 - -
Apr10g1150 497 Gene3D NAC domain 20 164 IPR036093 GO:0003677|GO:0006355
Apr10g1150 497 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 8 450 - -
Apr10g1150 497 ProSiteProfiles NAC domain profile. 11 159 IPR003441 GO:0003677|GO:0006355
Apr10g1150 497 SUPERFAMILY NAC domain 6 159 IPR036093 GO:0003677|GO:0006355
Apr10g1150 497 Pfam No apical meristem (NAM) protein 12 139 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1150 Apr-Chr10 23736133 23741197 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1150 8 166 NAC Transcription Factor Family AT4G35580 53.374 2.97e-54 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr10g1150 NAM 7.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1150 - - gsj:114390609 510.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1150 10 23736133 23741197 Apr10g1150 10 23736133 23741197 ECH