Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1141 ATGAACAACAACGTTGGACAATTTGGAGACACAACTCTTACCAAAGTTTTTATTGGAGGGTTAGCTTGGGAGACTCCTAAGGATGCCCTCAAAGAACACTTTGAGAAGTACGGTGAGATCCTCGAAGCCGTCATCATTTCCGATAAGTTTAGTGGCAAATCCAAAGGCTATGGCTTTGTGACGTTCAAGGAGGCTGAGGCTGCGAAGAAGGCTTGCGAGGACTCAACAAATCTCATTATCAATGGCCGTCGAGCAAATTGCAATTTGGCTTTCCTCGGTGCTCGTCGCTCAAAGTCTCCTTCCACTGCTTCATCGCCACCTCCAAAACCACAAGAAGGATCAAACGATGGAGGAGCGAGGAGCAACGCATCAAGCGCACCAGCCAATCACGTGCAGCGGTATTATCCGGTGGGGACACCGGTTTCCCTGTTGCATCATCCCTTCTATGGGTACACACTTGTCACGGACATAAATTACAATTACAATCAGAAGCTGTGCTACGGCAATGGTGGGGCCTACATGAATGGGCACCAGTTTTACCAGGTGTACCCGAGGAATGCTATTATGGGTGCGAGCACAATGATGCCAATGTACCCTCTCTATCATTGTCATCATCCATTAGATGGCAATGGGGCATTTTGGGCCAACACACATCATGTCCAAGCCAGCATCCATCATTCCTCACACAGGTGCGACACATGA 702 0.4858 MNNNVGQFGDTTLTKVFIGGLAWETPKDALKEHFEKYGEILEAVIISDKFSGKSKGYGFVTFKEAEAAKKACEDSTNLIINGRRANCNLAFLGARRSKSPSTASSPPPKPQEGSNDGGARSNASSAPANHVQRYYPVGTPVSLLHHPFYGYTLVTDINYNYNQKLCYGNGGAYMNGHQFYQVYPRNAIMGASTMMPMYPLYHCHHPLDGNGAFWANTHHVQASIHHSSHRCDT* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1141 233 PANTHER RNA-BINDING PROTEIN ARP1-RELATED 3 212 - -
Apr10g1141 233 CDD RRM_RBM24_RBM38_like 14 90 - -
Apr10g1141 233 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 92 IPR000504 GO:0003723
Apr10g1141 233 PANTHER GEO13361P1-RELATED 3 212 - -
Apr10g1141 233 Gene3D - 9 133 IPR012677 -
Apr10g1141 233 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 84 IPR000504 GO:0003723
Apr10g1141 233 SUPERFAMILY RNA-binding domain, RBD 11 118 IPR035979 GO:0003676
Apr10g1141 233 SMART rrm1_1 15 88 IPR000504 GO:0003723
Apr10g1141 233 MobiDBLite consensus disorder prediction 96 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1141 Apr-Chr10 23670024 23671685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1141 10 152 C2H2 Transcription Factor Family AT2G19380 31.646 1.12e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1141 - - lang:109337745 290.426