Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1136 ATGAGTACCATTCTCTCCTTCCTCACAGCCATTGTTTTTGTGGCTAAATCATTTCAAAACTACATGATTCAAAGGCTGCATAAACTCTATGATCATTATAGTTATGCTGCAACAGTGAAGGATAATGAAGAGGGTGAAAGCGATTATTGTTCAGTGTGTCTATGCCAAATTTATAAAGGGGAAAAGGTTCGGTCTCTTCCAGTATGCAAACACAGATATCATGCTGATTGCATTGGTGCTTGGTTGAAGAACCACCCCACGTGCCCTCTTTGTAGGAACAAAATCACTGACCATATTCCTCATAATCAACTTAAACAGGTGAAAAACTTGAGAGAATCTATGATTAATCTCGTGCAGAGTTTGTCTGATCTATTGGTAACTCTTTTCTACTTGACACTTCCATCTAGCACCACTGAGAGTTTTCCCTTGATTCGTTGA 438 0.3904 MSTILSFLTAIVFVAKSFQNYMIQRLHKLYDHYSYAATVKDNEEGESDYCSVCLCQIYKGEKVRSLPVCKHRYHADCIGAWLKNHPTCPLCRNKITDHIPHNQLKQVKNLRESMINLVQSLSDLLVTLFYLTLPSSTTESFPLIR* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1136 145 SUPERFAMILY RING/U-box 38 99 - -
Apr10g1136 145 PANTHER RING-H2 FINGER PROTEIN ATL2 37 105 - -
Apr10g1136 145 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 98 IPR013083 -
Apr10g1136 145 Pfam Ring finger domain 49 92 IPR001841 -
Apr10g1136 145 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 37 105 IPR044675 -
Apr10g1136 145 SMART ring_2 50 91 IPR001841 -
Apr10g1136 145 CDD RING-H2_PA-TM-RING 50 92 - -
Apr10g1136 145 ProSiteProfiles Zinc finger RING-type profile. 50 92 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1136 Apr-Chr10 23634519 23634956 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1136 16 109 C3H Transcription Factor Family AT2G17450 30.612 2.70e-15 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1136 - - gmx:100500375 221.861