Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1135 ATGGGTGCAACGACAGGATCAAGCGACTCATTAGGTGAATCTGGCACAGTCGCGATTACTGGGAAGATCATGGTGGTGGCTATAATCTTCTTCTTCATGGTGGTTGTGTTTGTCTTTGTGCTTCATCTCTATGCAAAATGGTTCTGGTGGAGTATTGAGCAAAACATTACTCCTCAACCCGGCAACCGGCGCCCGCGCCGGCGCCGGTTTGTCTTCGCCCCCGGCCAAGACCCGGTCATCTATGGCAATCACCAAACTGGGCTTGACCCTTCAGTTCTTAGGTCCTTGCCAGTGTTGGTGTTTCAGCCAGAGGAATTCAAAGATGGTTTGGAATGTGCTGTGTGTCTCGCTGAGATTGTTCAAGGTGAAAAGGCAAGGCTTTTACCTAAATGTAACCATGGGTTTCATGTGGATTGCATTGATATGTGGTTCCAATCCCATTCTACTTGCCCTCTTTGTAGAAACCCTGTTGCCTCCTCTGAATCTTCTAAGCCAAGTGGTAGTTCAAATGCCGAAGAGAATGTCTCGGTGAATAATAATAATGAGTCATCAGAGCAAGAAAATTCAGCTGCCGTTAGTGGCTTAGAGTCTTCAAATTTTCCTACAAATGTGTTGGTTTGGGGGAATCAGACACAAGTTAGTTCTGTTGGTGTTTCCTTGGCAGAAGAAGGCACTTCTCAGCAACCTCCTTGTTCTTCTTCCACACCTTCTTCTTCAACTAATGAGAGTGTTAATCGTAGTAGGTGTAATGGAATGTTGGTAATTGATATACCAAGTGAGTTCACTTCTTCACCTTTGTCTCCTTCAGGGAATAGGTGTGCTGAAGATGAGGTGAAATCACCAATGGCAGCCACATTGAGGTCATTTAAGAGGCTTTTAAGCAGGGACAAAAAGTTAAGTCCTTGTAGTCCTAGTTCTATGGATGTGGAACAAGCGCAGGGATAG 945 0.454 MGATTGSSDSLGESGTVAITGKIMVVAIIFFFMVVVFVFVLHLYAKWFWWSIEQNITPQPGNRRPRRRRFVFAPGQDPVIYGNHQTGLDPSVLRSLPVLVFQPEEFKDGLECAVCLAEIVQGEKARLLPKCNHGFHVDCIDMWFQSHSTCPLCRNPVASSESSKPSGSSNAEENVSVNNNNESSEQENSAAVSGLESSNFPTNVLVWGNQTQVSSVGVSLAEEGTSQQPPCSSSTPSSSTNESVNRSRCNGMLVIDIPSEFTSSPLSPSGNRCAEDEVKSPMAATLRSFKRLLSRDKKLSPCSPSSMDVEQAQG* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1135 314 SUPERFAMILY RING/U-box 92 161 - -
Apr10g1135 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 160 IPR013083 -
Apr10g1135 314 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Apr10g1135 314 CDD RING-H2_EL5_like 111 154 - -
Apr10g1135 314 Pfam Ring finger domain 111 154 IPR001841 -
Apr10g1135 314 MobiDBLite consensus disorder prediction 260 280 - -
Apr10g1135 314 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 7 311 IPR044675 -
Apr10g1135 314 MobiDBLite consensus disorder prediction 217 245 - -
Apr10g1135 314 MobiDBLite consensus disorder prediction 156 195 - -
Apr10g1135 314 SMART ring_2 112 153 IPR001841 -
Apr10g1135 314 PANTHER RING-H2 FINGER PROTEIN ATL3 7 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1135 Apr-Chr10 23627980 23629300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1135 21 297 C3H Transcription Factor Family AT1G53820 46.939 4.72e-74 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1135 - - gmx:100775523 418.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1135 10 23627980 23629300 Apr10g1135 10 23627980 23629300 ECH