Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1131 ATGACCACCTTCAAACAAGCCATCGCCGGAATCTCCAATTCCGGCAACCGCATTTCCCTCTCCAAGAAAAAACTCTTCCTCTCCCTCTTCGCCACCCTCCTCGTGGTGGTCTCGGCGGTGGCCATCATCGCCGGAGTAACAAAAAAAACCTCAAACTCCTCCTCCTCCTCCACCCTCTCCCTCTCCCACAACACCCACGCGATCATCAAAAGCGCGTGCAGCACCACACTCTACCCTGAACTCTGCTTCTCAGCAATATCCTCCGAACCAAACGTCACACACAAAGTCACAGCACACCGTGACGTCATCGAACTCTCCCTCAACATAACCGCAAGAGCCGTTGAACACAACTTCTTCACCGTCCAAAAGCTTCTAACCAAACACGACCTTACAAAAAGAGAAAAAACCGCACTCCATGATTGCTTAGAAACCATAGACCAAACCCTCGACGAACTCAAACAAGCCCAACAAGATCTCAAACTTTACCCTAACAAAAAAACTCTCTACCAACACGCTGATGATCTCAAAACGCTCATTAGCGCCGCCATTACCAACCAAGTCACTTGCTTGGACGGCTTTTCCCACGAGGAAGCTGATAAGCGAGTTAGAAAGGCATTGGAAGAAGGACAGGTTCACGTGGAACACATGTGTAGCAATGCATTGGCCATGACCAAGAACATGACCGACACTGACATAGCAAACTACGAAGAGAAAACGAAGGTGGTAAATAGGAAGTTGTTGGAGAATAACGAGTGGCCGGAATGGATTTCCGCCGCCGATAGAAGGCTTCTTCAGGCGCCGACGGTGAAACCCGACGTGGTGGTGGCGGCGGACGGTAGTGGGAACTTTAAGACGGTGGGGGAAGCGGTGGCGGCGGCTCCGGAGAAGAGTAGTAAGAGGTATGTTATAAGGATAAAAGCTGGGGTGTATAAGGAGAATGTTGAGGTTCCTAAGAAGAAGACTAATATCATGTTCTTGGGTGATGGAAGAACCAACACTATCATCACTGGTAGCAGAAATGTTGTTGATGGTAGCACTACTTTTCACTCTGCCACTGTCGCCATTGTGGGTGCACAATTTTTGGCCCGAGACATAACATTTCAAAACACAGCGGGTCCCTCAAAGCATCAAGCTGTGGCTCTACGCGTTGGTGGGGACCTCTCAGCATTCTACAACTGTGACATATTAGCATACCAAGATACCCTTTATGTTCACAACAATCGTCAATTTTTTGTGAATTGCCTTATAGCTGGGACAGTGGATTTTATCTTTGGTAATTCAGCTGTGGTGTTCCAAAATTGTGACATTCATGCTAGGCGTCCTGATTCAGGTCAAAAGAACATGATCACAGCACAAGGTAGGGTCGATCCTAACCAAAACACTGGCATTGTGATTCAAAAGTGTAGAATTGGTGCCACTAAGGATTTGGAAGCTATGAAGAAGAGTTTTTCTACTTATCTTGGGAGGCCTTGGAAGGAGTATTCTAGGACTGTGTTCATGCAAAGTAGTATTAGTGATGTGATTGACCCAGTTGGGTGGCATGAGTGGAATGGAAACTTTGCATTAAATACTTTGGTTTATAGGGAATATCAAAATACTGGGCCTGGTGCTGCAACTTCAAAGAGGGTTTCTTGGAAAGGGTTTAAGGTCATTACTGATCCTGCTGAGGCCCAGACTTATACTCCTGGAAGGTTCATTTCAGGCTCTAACTGGTTGGGCTCTACTGGGTTCCCTTTCTCTCTTGGGTTGTAA 1752 0.4697 MTTFKQAIAGISNSGNRISLSKKKLFLSLFATLLVVVSAVAIIAGVTKKTSNSSSSSTLSLSHNTHAIIKSACSTTLYPELCFSAISSEPNVTHKVTAHRDVIELSLNITARAVEHNFFTVQKLLTKHDLTKREKTALHDCLETIDQTLDELKQAQQDLKLYPNKKTLYQHADDLKTLISAAITNQVTCLDGFSHEEADKRVRKALEEGQVHVEHMCSNALAMTKNMTDTDIANYEEKTKVVNRKLLENNEWPEWISAADRRLLQAPTVKPDVVVAADGSGNFKTVGEAVAAAPEKSSKRYVIRIKAGVYKENVEVPKKKTNIMFLGDGRTNTIITGSRNVVDGSTTFHSATVAIVGAQFLARDITFQNTAGPSKHQAVALRVGGDLSAFYNCDILAYQDTLYVHNNRQFFVNCLIAGTVDFIFGNSAVVFQNCDIHARRPDSGQKNMITAQGRVDPNQNTGIVIQKCRIGATKDLEAMKKSFSTYLGRPWKEYSRTVFMQSSISDVIDPVGWHEWNGNFALNTLVYREYQNTGPGAATSKRVSWKGFKVITDPAEAQTYTPGRFISGSNWLGSTGFPFSLGL* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1131 583 Gene3D Invertase/pectin methylesterase inhibitor family protein 64 228 IPR035513 -
Apr10g1131 583 Pfam Pectinesterase 272 568 IPR000070 GO:0030599|GO:0042545
Apr10g1131 583 Gene3D - 266 583 IPR012334 -
Apr10g1131 583 PANTHER PECTINESTERASE 20 582 - -
Apr10g1131 583 Coils Coil 138 158 - -
Apr10g1131 583 SUPERFAMILY Pectin lyase-like 267 582 IPR011050 -
Apr10g1131 583 TIGRFAM PME_inhib: pectinesterase inhibitor domain 54 227 IPR006501 GO:0004857
Apr10g1131 583 ProSitePatterns Pectinesterase signature 2. 416 425 IPR033131 -
Apr10g1131 583 Pfam Plant invertase/pectin methylesterase inhibitor 68 223 IPR006501 GO:0004857
Apr10g1131 583 ProSitePatterns Pectinesterase signature 1. 297 316 IPR018040 -
Apr10g1131 583 PANTHER PECTINESTERASE 20 582 - -
Apr10g1131 583 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 68 228 IPR035513 -
Apr10g1131 583 SMART PMEI_2 64 223 IPR006501 GO:0004857
Apr10g1131 583 CDD PMEI-like_3 71 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1131 Apr-Chr10 23588572 23593638 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1131 21 583 Carbohydrate Esterase AT3G14310 69.521 0.0 818
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1131 K01051 - gmx:100776623 943.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1131 10 23588572 23593638 Apr10g1131 10 23588572 23593638 ECH