Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1130 ATGGATACGATCAAGTCATTTAAGGGGTACGGCAAAGTAGATGAGGTGGAGCAGCGAGCCTTTCAGAAGAAGACACGTAAGCGCATTATAATAATCGTAGTCTCCTCCATCGTCCTAATAGCGGTGATCATCGCCGCGGTTGCAGGGATCGTGATACACAAGCGCAACACCTCGTCATCACCATCCTCCGACTCGCTCCCCCAAACTGAGTTAACCCCAGCCGCGTCTCTCAAAGCGGTTTGCAGCGTGACTCAGTACCCTAACTCGTGTCTCGCCGCCATCTCCTCCCTCCCAAACTCCAACACCACCGACCCGGAGCTTCTCTTCAAGCTCTCGCTACGCGTCGCCATTGACGAACTCTCGAAGCTTTCTACCTTCTCTTCCAAGCTTCGCGCCAATGCCGGCAACGACACGCGCCTCCAGAAAGCAATCGATGTTTGCGCCGCCGTACTCGACGACTCGCTCGACCGACTCAACGACTCGATCTCCTCTCTCGGAGTCGCTGGCTCCAGGAAGATGATTTCTCCGGCGAACACTAACGACGTCGAGACCTGGCTCAGCGCCGCCATCACGGATCAGGACACATGCCTGGACGCTCTCGGAGAGCTTAACTCCACCGCCGCTCGCGGCGTGCTCCGGGAACTCGGAACCGCAATGAAGAACTCCACGGAGTTCTCGAGTAACAGCTTGGCCATCGTGACGAGGATCCTAGGGTTGCTGTCGAAGTTCGAAGCGCCGATCCACCACCGGAGGTTGCTAGGGTTCCCGGAGTGGTTGGGCGCAGCGGAGCGGAAGCTGCTGGAGGCGAAGAGTAACGAAACGAAGCCGGATGCGGTGGTGGCGAAGGACGGTACCGGACAGTACACGACGATTGCGGAGGCGCTGAAGTTGGTGAAGAGGAAGAGCGAGAAGAGATTCGTGGTTTACGTGAAGGAAGGGCGTTACGAGGAGAACATCGATTTGGATAAGCATACGTGGAATGTGATGATCTACGGTGACGGAAAGACCAAAACCGTCGTCTACGGTGGGCGGAACTTCATGGACGGCACTCCCACTTTCGAAACTGCCACTTTCGCTGTTAAAGGCAAGGGATTCATTGCCAAAAACATAGGATTTGTGAACACTGCAGGTGCATCTAAGCACCAGGCTGTGGCATTGAGATCTGGCTCAGATCGCTCTGTGTTCTACAGATGCTCATTTGATGGCTTCCAGGATACCCTCTATGCCCATTCAAACCGCCAGTTCTACCGTGAGTGTGACATTACAGGCACCATAGACTTCATATTTGGCAATGCAGCTGTTGTGTTCCAAAGTTGCAAAATAATGCCTAGGCAACCTCTATCAAACCAGTTTAACACCATCACAGCTCAGGGCAAAAAGGACCCCAATCAGAACACTGGAATTATAATCCAGAAATCAACCATCACTCCCTTAGATAAGGACAATCTCACAGCTCCCACATACCTTGGTAGACCATGGAAAGATTACTCCACCACTGTTATCATGCAATCTGATATTGGGTCATTCTTGAAACCATCTGGGTGGATGAGTTGGGTCTCCAATGTGGATCCTGCTAATACCATTTTCTATGCTGAATACCAGAATACTGGGCCTGGAGCTGATGTTTCTCAGAGGGTCAAATGGGCTGGTTATAAGCCCACTCTCACGGACATTGAGGCTGGGAAGTTCACAGTGCAGTCCTTTATCCAAGGGCCTGAGTGGTTGCCAGATACTACTGTGGAATTTGACTCTACCTTGTGA 1761 0.5236 MDTIKSFKGYGKVDEVEQRAFQKKTRKRIIIIVVSSIVLIAVIIAAVAGIVIHKRNTSSSPSSDSLPQTELTPAASLKAVCSVTQYPNSCLAAISSLPNSNTTDPELLFKLSLRVAIDELSKLSTFSSKLRANAGNDTRLQKAIDVCAAVLDDSLDRLNDSISSLGVAGSRKMISPANTNDVETWLSAAITDQDTCLDALGELNSTAARGVLRELGTAMKNSTEFSSNSLAIVTRILGLLSKFEAPIHHRRLLGFPEWLGAAERKLLEAKSNETKPDAVVAKDGTGQYTTIAEALKLVKRKSEKRFVVYVKEGRYEENIDLDKHTWNVMIYGDGKTKTVVYGGRNFMDGTPTFETATFAVKGKGFIAKNIGFVNTAGASKHQAVALRSGSDRSVFYRCSFDGFQDTLYAHSNRQFYRECDITGTIDFIFGNAAVVFQSCKIMPRQPLSNQFNTITAQGKKDPNQNTGIIIQKSTITPLDKDNLTAPTYLGRPWKDYSTTVIMQSDIGSFLKPSGWMSWVSNVDPANTIFYAEYQNTGPGADVSQRVKWAGYKPTLTDIEAGKFTVQSFIQGPEWLPDTTVEFDSTL* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1130 586 Pfam Plant invertase/pectin methylesterase inhibitor 77 232 IPR006501 GO:0004857
Apr10g1130 586 PANTHER PECTINESTERASE 8 583 - -
Apr10g1130 586 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 237 IPR035513 -
Apr10g1130 586 SUPERFAMILY Pectin lyase-like 275 583 IPR011050 -
Apr10g1130 586 ProSitePatterns Pectinesterase signature 2. 421 430 IPR033131 -
Apr10g1130 586 Gene3D Invertase/pectin methylesterase inhibitor family protein 75 237 IPR035513 -
Apr10g1130 586 CDD PMEI-like_3 79 236 - -
Apr10g1130 586 Pfam Pectinesterase 277 571 IPR000070 GO:0030599|GO:0042545
Apr10g1130 586 SMART PMEI_2 72 232 IPR006501 GO:0004857
Apr10g1130 586 Gene3D - 271 586 IPR012334 -
Apr10g1130 586 PANTHER PECTINESTERASE 1-RELATED 8 583 - -
Apr10g1130 586 TIGRFAM PME_inhib: pectinesterase inhibitor domain 62 234 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1130 Apr-Chr10 23583531 23586551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1130 1 580 Carbohydrate Esterase AT1G53840 58.685 0.0 695
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1130 - - gmx:100777128 967.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1130 10 23583531 23586551 Apr10g1130 10 23583531 23586551 ECH