Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1121 ATGGCGTCTAATGGAGCAACCACTTCAGCAAAGCCAAAAACAATAAGGAGAAAGATTGAGATCAAGAAAGTGGAACAGAAAAGCAGGCGTCACGTGACTTTTTCCAAACGCAAATTGGGGCTTTTCAATAAACTCACCGAACTTTCCATTCTGTGCCATGCAGAAACCGCTTTGATCGTTACGTCTCAAAACGGCAAGCTCTATTCGTGTGGCTACCCTGATGCTGACGCCGTCATTCGCCGTTATCTCACGGGAGCGTCTCCGCAATGTGGCAGTAAACGGAAGCAACAAGAGTTAACTGAAAGCCTAAGGCTAGAATACGAGGCCTCTCAAAATCACTTATTAGAAGAGAAAACGCGTTTGCAAGAGATTAAAGAAGAGTCAGAGAAGAATAGCTTTGGGTTTTCATCGTGGTGGAACCATTCCATTGAGGATATGAGTTTGGATAATCTTGAACAGTTTAAGTCTTCTTTGGAAGGTTTGAAGCTTAACTTAGTTGCGGCGGTGCAAAATGAGAAGCTTGCGGTGGTGCAAAATGACAAGTTCAATTGTGAATTTCCACCTTTGCCACTTGCAGTTGTTCCACCGCCACAGTTGCCAAACTCGTTGATTCAGCGTCTTAGTGAACATCAAGTTCATGATTATTGGAATAGTGGTGGTGATGGTATTGATTACCTTCCATTTAAATTTCCTAGGAGTAGTTTTGCCCATTATTAG 717 0.4296 MASNGATTSAKPKTIRRKIEIKKVEQKSRRHVTFSKRKLGLFNKLTELSILCHAETALIVTSQNGKLYSCGYPDADAVIRRYLTGASPQCGSKRKQQELTESLRLEYEASQNHLLEEKTRLQEIKEESEKNSFGFSSWWNHSIEDMSLDNLEQFKSSLEGLKLNLVAAVQNEKLAVVQNDKFNCEFPPLPLAVVPPPQLPNSLIQRLSEHQVHDYWNSGGDGIDYLPFKFPRSSFAHY* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1121 238 PANTHER MADS BOX PROTEIN 13 180 - -
Apr10g1121 238 SMART madsneu2 14 73 IPR002100 GO:0003677|GO:0046983
Apr10g1121 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 23 69 IPR002100 GO:0003677|GO:0046983
Apr10g1121 238 Gene3D - 26 109 IPR036879 GO:0003677|GO:0046983
Apr10g1121 238 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 13 180 - -
Apr10g1121 238 PRINTS MADS domain signature 16 36 IPR002100 GO:0003677|GO:0046983
Apr10g1121 238 PRINTS MADS domain signature 36 51 IPR002100 GO:0003677|GO:0046983
Apr10g1121 238 PRINTS MADS domain signature 51 72 IPR002100 GO:0003677|GO:0046983
Apr10g1121 238 Coils Coil 107 131 - -
Apr10g1121 238 SUPERFAMILY SRF-like 16 84 IPR036879 GO:0003677|GO:0046983
Apr10g1121 238 ProSiteProfiles MADS-box domain profile. 14 74 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1121 Apr-Chr10 23513620 23514336 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1121 16 162 Type I MADS-box Gene Family AT5G60440 37.419 1.82e-24 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Apr10g1121 SRF-TF 9.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1121 - - gmx:100817750 226.098