Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1119 ATGGAGGGAACTTCATCGTCCTCCAGGGCCTCTACTGATGATGATCATCTATTAGTTGACGATTTCTACTTTTCAGCCCTTTACGATGCTGAAGAAGTTTTTCCAATCTCGGATGAGAAATATGCAGAAGAGTTACAACTACAAGAAGCCTTATACTCCTCTGCAACGTCAAGAACTAGAGTTGAAAATGATGTTATCAAAATGGGTGCACAAGTTGAGAGTGACACCCCTTTGAGAATCCTCAAGAGGAAACAAAAAGAGGTTGGTCAATCTTCCCAATCCCATGTCTACTGTGGTATTTGCATGGAAGCAAAACCTGGTGAAGAGATGTTTAGGAACCAAAACTGTTCTCACTCGTTTTGTGATGATTGTATTGTGAGATATGTTGCTGCAAAGATTCAAGAGAATATATCGATGGTTAAATGCCCTGATACTAAATGCAAGGGTGTTTTGGAGCCTCAGTGTTGTCGTTCAATTATTCCAAAGGATGTGTTTGATCGATGGGAAAATGCCCTTTGTGAGAATTTGGTGCTTGCATCACAAAAATTTTATTGCCCTTTTAAGAATTGTTCAGCTATGTTGGTGTGTGATGCTGAGGAAGTTATCACTACTTCTGAGTGTCCACATTGTAATAGATTGTTTTGTGCACAGTGCAAGGTTGCATGGCATGCAGGAATGGATTGTGAGAGGTATAGGCGCTTGAAGGAGGGTGATAGAGTTACGGAAGAACAAATGATAATGGAACTTGCGAAGAACAAGAGTTGGAGAAGATGTTCCAAATGCAAGTTCTATGTGGAGAAAGTTGATGGATGTTCACATATTTCTTGCAGATGTGGTAATGAATTTTGCTACGCTTGTGGATCATCCTGGAATCAGCACCATGCATGTAGCCCTCATTAA 900 0.4056 MEGTSSSSRASTDDDHLLVDDFYFSALYDAEEVFPISDEKYAEELQLQEALYSSATSRTRVENDVIKMGAQVESDTPLRILKRKQKEVGQSSQSHVYCGICMEAKPGEEMFRNQNCSHSFCDDCIVRYVAAKIQENISMVKCPDTKCKGVLEPQCCRSIIPKDVFDRWENALCENLVLASQKFYCPFKNCSAMLVCDAEEVITTSECPHCNRLFCAQCKVAWHAGMDCERYRRLKEGDRVTEEQMIMELAKNKSWRRCSKCKFYVEKVDGCSHISCRCGNEFCYACGSSWNQHHACSPH* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1119 299 ProSiteProfiles TRIAD supradomain profile. 94 299 IPR044066 -
Apr10g1119 299 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 19 298 IPR031127 GO:0004842|GO:0016567
Apr10g1119 299 Gene3D - 225 299 - -
Apr10g1119 299 ProSiteProfiles Zinc finger RING-type profile. 98 146 IPR001841 -
Apr10g1119 299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 180 IPR013083 -
Apr10g1119 299 SMART ring_2 98 145 IPR001841 -
Apr10g1119 299 SUPERFAMILY RING/U-box 239 298 - -
Apr10g1119 299 Pfam IBR domain, a half RING-finger domain 167 228 IPR002867 -
Apr10g1119 299 Pfam IBR domain, a half RING-finger domain 245 296 IPR002867 -
Apr10g1119 299 ProSitePatterns Zinc finger RING-type signature. 116 125 IPR017907 -
Apr10g1119 299 SUPERFAMILY RING/U-box 173 233 - -
Apr10g1119 299 SMART ibrneu5 166 228 IPR002867 -
Apr10g1119 299 SMART ibrneu5 229 296 IPR002867 -
Apr10g1119 299 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 19 298 - -
Apr10g1119 299 SUPERFAMILY RING/U-box 93 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1119 Apr-Chr10 23501439 23502554 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1119 98 288 C3H Transcription Factor Family AT2G19610 25.743 3.35e-19 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1119 K11975 - gmx:100815626 441.039