Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1117 ATGTGTGGAGGTGCTATTATCTCCGACTTCATTCCGGCGGGACCCGCCGGAAGGTCCCGGCGGGTGACCGCCGACATCCTGTGGCCGAATTTGAGGAAACCCAGTTCGGAGAAGCGCTTCTCGAAGCCGTTGTTGGACGATGACTTCGAGGCTGGATTCAGGGAATTCAAGGATGACTCTGAAATCGATGAGGATGATGATGAGGATGAGGATGGTGACTTGCTGGTTGGTGTTAAGCCCTTTCGCTTTTCTTCTTCCAACAAGCCTTCAAAGCCCCTTCTCTCTCGTGGATCATCAACTGTAAAATCTGTGGAATTAAAGGGGCAAGCTGAGAAGTCTGCTAATTCTAAGAGAAAGAGGAAGAATCAGTATAGGGGAATCCGTCAGCGTCCATGGGGAAAATGGGCAGCTGAAATCCGTGACCCAAGAAAGGGGGTTCGTGTTTGGCTTGGAACTTTCAGCACTGCTGAAGAAGCTGCTAGAGCTTATGATGCTGAAGCAAGGAGGATTCGTGGCAAGAAAGCCAAGGTTAATTTCCCTGATGAGGCTCCAGTTGCTTCCTCAAAACGCTTCAAGGCAAGCCCAGGAGAGCAGTCACTAAAGGACAATCTTAACTCTGTTAAGCCAAAACTGAACCAAATGTTCAACTTTGGTGACAATCTGGAGGACTACTACAGCCCTATAGATCAGGTGGAGCAGAAACCACTGGTTAACCAGTATGCTAACATGGCCTCGTTCCCTGGAAATGGAGTTGAAATCTCACCTGTTACTGCATCTGCTGATGTTACTACTTATTTCAGTTCTGAGCATTCGAGCAATTCGTTTGATTATTCTGATCTTGGATGGGGTGAGCAGGGTCCAAAGACTCCTGAGATCTCATCCATGCTTTCTGCTCCTCTGGAAGGTGAATCTCAGTTTGTTCAGGCTGATCAGAAGAAAAACTCTCAGGATCTGATGTCCGTGCAAGATGATTCTGCAAAGACTCTATCTGAGGAGCTCGCTGATATTGAGTCTCAGCTGAAGTTCTTTGATACCCCTTTCCTTGATGGAGCCTGGGGCGATGCTTCGCTGGCATCATTGCTCGGTGGAGATGCAACTCAGGATGGTGGAAACCCTATGAACCTTTGGAGCTTCGATGACCTGGCTTCCATGGCAGGAGGAGTTTTCTGA 1170 0.4846 MCGGAIISDFIPAGPAGRSRRVTADILWPNLRKPSSEKRFSKPLLDDDFEAGFREFKDDSEIDEDDDEDEDGDLLVGVKPFRFSSSNKPSKPLLSRGSSTVKSVELKGQAEKSANSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFSTAEEAARAYDAEARRIRGKKAKVNFPDEAPVASSKRFKASPGEQSLKDNLNSVKPKLNQMFNFGDNLEDYYSPIDQVEQKPLVNQYANMASFPGNGVEISPVTASADVTTYFSSEHSSNSFDYSDLGWGEQGPKTPEISSMLSAPLEGESQFVQADQKKNSQDLMSVQDDSAKTLSEELADIESQLKFFDTPFLDGAWGDASLASLLGGDATQDGGNPMNLWSFDDLASMAGGVF* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1117 389 MobiDBLite consensus disorder prediction 80 127 - -
Apr10g1117 389 CDD AP2 123 181 IPR001471 GO:0003700|GO:0006355
Apr10g1117 389 PRINTS Ethylene responsive element binding protein signature 124 135 IPR001471 GO:0003700|GO:0006355
Apr10g1117 389 PRINTS Ethylene responsive element binding protein signature 146 162 IPR001471 GO:0003700|GO:0006355
Apr10g1117 389 PANTHER EREBP TRANSCRIPTION FACTOR 1 383 - -
Apr10g1117 389 Pfam AP2 domain 123 172 IPR001471 GO:0003700|GO:0006355
Apr10g1117 389 ProSiteProfiles AP2/ERF domain profile. 123 180 IPR001471 GO:0003700|GO:0006355
Apr10g1117 389 SMART rav1_2 123 186 IPR001471 GO:0003700|GO:0006355
Apr10g1117 389 Gene3D AP2/ERF domain 122 181 IPR036955 GO:0003700|GO:0006355
Apr10g1117 389 PANTHER DNA-BINDING DOMAIN 1 383 IPR044808 GO:0003700|GO:0009873
Apr10g1117 389 SUPERFAMILY DNA-binding domain 123 182 IPR016177 GO:0003677
Apr10g1117 389 MobiDBLite consensus disorder prediction 83 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1117 Apr-Chr10 23473060 23476377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1117 1 389 AP2-EREBP Transcription Factor Family AT3G14230 44.712 4.40e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr10g1117 AP2 4.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1117 K09286 - gmx:100818646 556.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1117 10 23473060 23476377 Apr10g1117 10 23473060 23476377 ECH