Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1109 ATGGCCACCGCCACCAACACCACCGCAGCACCGCCGCGCCAGCTGTCGCAGAAGGAAGCCGACATCCAGATGATGTTGGCCGCCGACGTCCACCTCGGCACTAAGAACTGCGACTTCCAAATGGAACGCTACATCTTCAAGCGCCGCAACGACGGGATTTACATTATCAATCTTGGGAAGACTTGGGAGAAGCTTCAACTTGCTGCTAGGGTTATTGTTGCAATTGAGAATCCTCAGGATATTATTGTTCAATCTGCGAGGCCTTATGGGCAGAGAGCAGTTCTGAAGTTTGCTCAATACACTGGTGCTCATGCTATTGCTGGAAGGCACACTCCTGGTACTTTCACCAATCAACTTCAAACTTCATTCAGCGAGCCTCGCCTTCTTATCCTCACTGATCCACGAACAGATCACCAGCCTATTAAGGAAGCTGCTCTTGGAAATATCCCAACCATTGCTTTCTGTGACACTGATTCTCCTATGCGCTATGTTGACATTGGAATTCCTGCTAACAATAAGGGCAAACATAGCATCGGTTGTCTCTTTTGGCTTCTTGCCAGAATGGTGTTGCAGATGCGTGGTACCATTCGCCCTGGCCTTAAGTGGGATGTGATGGTGGATTTGTTTTTCTATAGAGAACCCGAGGAGGCCAAGCAACAAGAGGAGGATGAAGCTCCTGCGGGAGATTATGCCATTGCAGACTTCAATGCGGGTGCTATTGCTGCTGATGGCCAATGGCCTGCTGCAGTTGATCAGTCATGGAGCGATGCAGTTCCACAACCAATTCCAGCAGTTCCTGCTGTCGGCTGGGCGGCAACAGATGCTACTGGAGATTGGGGTGATTCCGTTCCACCACCGCAACAACAAATCCCTGCGCCTGGAGTTGAGTCTGTCCAACCTTCTGGCTGGGACTAA 915 0.5071 MATATNTTAAPPRQLSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEDEAPAGDYAIADFNAGAIAADGQWPAAVDQSWSDAVPQPIPAVPAVGWAATDATGDWGDSVPPPQQQIPAPGVESVQPSGWD* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1109 304 PANTHER 40S RIBOSOMAL PROTEIN SA 13 294 IPR005707 GO:0003735|GO:0006412|GO:0015935
Apr10g1109 304 Gene3D - 21 226 - -
Apr10g1109 304 ProSitePatterns Ribosomal protein S2 signature 2. 126 150 IPR018130 GO:0003735|GO:0005840|GO:0006412
Apr10g1109 304 TIGRFAM uS2_euk_arch: ribosomal protein uS2 17 213 IPR005707 GO:0003735|GO:0006412|GO:0015935
Apr10g1109 304 Hamap 40S ribosomal protein SA [rps-0]. 9 249 IPR027498 GO:0003735|GO:0006412|GO:0015935
Apr10g1109 304 PRINTS Ribosomal protein S2 signature 22 40 IPR001865 GO:0003735|GO:0005840|GO:0006412
Apr10g1109 304 PRINTS Ribosomal protein S2 signature 52 61 IPR001865 GO:0003735|GO:0005840|GO:0006412
Apr10g1109 304 PRINTS Ribosomal protein S2 signature 101 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Apr10g1109 304 PRINTS Ribosomal protein S2 signature 126 143 IPR001865 GO:0003735|GO:0005840|GO:0006412
Apr10g1109 304 PRINTS Ribosomal protein S2 signature 143 154 IPR001865 GO:0003735|GO:0005840|GO:0006412
Apr10g1109 304 PRINTS Ribosomal protein S2 signature 164 178 IPR001865 GO:0003735|GO:0005840|GO:0006412
Apr10g1109 304 CDD RPS2 25 191 IPR001865 GO:0003735|GO:0005840|GO:0006412
Apr10g1109 304 PANTHER 40S RIBOSOMAL PROTEIN SA 13 294 - -
Apr10g1109 304 SUPERFAMILY Ribosomal protein S2 17 207 IPR023591 -
Apr10g1109 304 Pfam Ribosomal protein S2 25 119 IPR001865 GO:0003735|GO:0005840|GO:0006412
Apr10g1109 304 Pfam Ribosomal protein S2 124 189 IPR001865 GO:0003735|GO:0005840|GO:0006412
Apr10g1109 304 MobiDBLite consensus disorder prediction 269 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1109 Apr-Chr10 23405471 23407410 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1109 4 284 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 76.408 5.33e-154 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1109 K02998 - gmx:548014 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1109 10 23405471 23407410 Apr10g1109 10 23405471 23407410 ECH