Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1102 ATGGCTAATGAAGGAAACAAAAGCAATGATTTCTATGCGATCCTGGGCTTGAATAAGGAGTGTACTGAATCAGAGCTAAGGAATGCTTATAAGAAACTTGCACTGAAATGGCACCCAGATCGTTGTTCAGCATCCGGGAATTCAAAGTTCGTGGAAGAAGCTAAGAAAAAATTTCAGGCAATTCAGCAAGCCTATTCTGTTTTATCTGATGCCAACAAAAGGTTAATGTACGACGTAGGAGTCTACGACAGTGATGACGACGAAAATGGCATGGGGGATTTCTTGAATGAAATGGTGACAATGATGAGTAAGACTAAAACAAATGAAAATGGAGAGGAGAGCTTTGAGGAATTGCAACAGTTGTTTGAAGACATGTTTCAAGCGGATAATCGATTCGATGAAAGCCCCTCTCTTGCAGCTACTGGTTGCTCTACTTCATCTGCCTACATGACATATAGTGAAAGTTCTAATTCAAATAAACGCAATTCCACTGAGATGAATTTTGGGAAGGCAGAGGGTTCTTCTCACTTTGATGCCAGTTACCAGAATTTCTGTTTTGGGGTGAAGCACCACCTCCAAGATATCAACAAAAGAAGGGGGGTAATTCCAGAAGGAGGAGGTAGCAATAGACAGAGAAATGGTAGAAAGCGAAAAATGTCCTATGGCCATGATGTTTCATCTAATGACTACCCTGGAATTTCCACCAAGTAA 711 0.4093 MANEGNKSNDFYAILGLNKECTESELRNAYKKLALKWHPDRCSASGNSKFVEEAKKKFQAIQQAYSVLSDANKRLMYDVGVYDSDDDENGMGDFLNEMVTMMSKTKTNENGEESFEELQQLFEDMFQADNRFDESPSLAATGCSTSSAYMTYSESSNSNKRNSTEMNFGKAEGSSHFDASYQNFCFGVKHHLQDINKRRGVIPEGGGSNRQRNGRKRKMSYGHDVSSNDYPGISTK* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1102 236 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Apr10g1102 236 SMART dnaj_3 9 73 IPR001623 -
Apr10g1102 236 Gene3D DnaJ domain 7 135 IPR036869 -
Apr10g1102 236 PANTHER PUTATIVE, EXPRESSED-RELATED 1 230 - -
Apr10g1102 236 PRINTS DnaJ domain signature 12 30 IPR001623 -
Apr10g1102 236 PRINTS DnaJ domain signature 30 45 IPR001623 -
Apr10g1102 236 PRINTS DnaJ domain signature 53 73 IPR001623 -
Apr10g1102 236 PRINTS DnaJ domain signature 73 92 IPR001623 -
Apr10g1102 236 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 230 - -
Apr10g1102 236 CDD DnaJ 10 70 IPR001623 -
Apr10g1102 236 Pfam DnaJ domain 10 78 IPR001623 -
Apr10g1102 236 MobiDBLite consensus disorder prediction 197 236 - -
Apr10g1102 236 ProSiteProfiles dnaJ domain profile. 10 81 IPR001623 -
Apr10g1102 236 SUPERFAMILY Chaperone J-domain 7 80 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1102 Apr-Chr10 23367998 23371678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1102 12 78 C2H2 Transcription Factor Family AT1G74250 44.118 6.33e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1102 - - gmx:100791192 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1102 10 23367998 23371678 Apr10g1102 10 23367998 23371678 ECH