Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1098 ATGGCTGATTCTTCTTCCTTTGAGGGTGATCACTACACAAGCCACCACACACGACACTATCCAACACCAGTGAGTTATCGTAGTGTGTCTGGTTCAGGCTCTTTCATACCATCCAGCTCTCAAAGCAATGCCACTTCCAGATCCAGAAGAGCTAGCCGCAACAAAGTTCTTACCACACCCTTTGCTTCAGATGATGACAATTCATGGCAAGAAGAGGTTTCATGGAAGTTCGACGCCACTGGGTTGCATGAGTATAGCACAAACTTTGGTTCTATTCTGAGTCCATGGCCAACTAGCTCCCCTTATGATCGCAGTCGTGTGTTTCGCCAATCAGCCAATGACTATTACCTTTCTCAAACAAGTAGGTTTAGAGGCCCCACGAACCCTTCTTATGAACATTCTAGCTATGGTAGAGTTGAACTTCGGAGTTATGTTGCTAGGGACAATGTGAATGATCGTAGTTACTTTGATCAGCATAGCCAGCCTCATGGGTTATCAAAACTGGGTATCACTCAAGAGAGGAGTGGTAGAGAAGATAAGAGTAGTCCTTTGGCTGAGGAAGATGAGCTTGGAATGATAGATTATAGCATAACAGATGAACCTATTATTTCACCTTATAGGAATGATCATGATCTTGAATTACCATATGTTAAACATGCTCATGGTGGGAATTATTTTGTTGGTGATCATGGATCACCATCATATGGTAGCAAATCTGGTAGCCAACTTTATGGAGGTGGTGGTGGTTATAGTCACCATGACATTGAAAAGTTTTCAGGATATGATGAAGAAGGTGAGGAGGATATGGAAGAGGAAGATGCAAGGCCTCCAAAGACAGTTGGGTTGTTGAGCTTGTTTAGGTACTCAACTAAGTGGGATTTGGTGCTTGTGTTTGTGGGCTGTTTAGGTGCTCTCATAAATGGAGGATCACTTCCTTGGTATTCTTATCTTTTCGGAGAATTGATAAATAAGATTGCAGGAGCTGACAAGGACGAAGTCCCGATGAAGGATGTAGAGAAGATATGCATATATATGGCCGGGCTTGCTGCTGTTGTGATTGTTGGAGCATATTTACAGATCGCATGTTGGAGGTTAGTTGGGGAGCGATCTGCTCAAAGGATCAGAACTGAATATCTTAGAGCAGTTCTTCGACAGGACATAAGTTTTTTTGATACAGAGATCAACACTGGTGATATTATGCACGGAATTGCTAGTGATGTTGCACAAATTCAAGAAGTTTTGGGAGAGAAGATGGCCCACTTCGTTCATCATATATTTACATTCATATTTGGGTACGTAGTTGGGTTTAGAAGATCATGGAAAGTCTCTCTAGCAGTATTCTCAGTCACTCCGTTGACAATGTTTTGTGGTATGGCTTACAAAGCACTTTATGGTGGTCTAGCAGCAAAAGAGGAAGCTTCTTATAGGAAAGCTGGTAGCATTGCGGAGCAGGCCATTAGTTCAATTAGGACAGTGTTTTCATTTGTGGCAGAAAGCCAATTGGCTGAAAAATATTCTGAATTATTGCAAAAATCAGTACCAATAGGAGCAAAACTTGGTTTTGCTAAGGGTATAGGCATGGGTGTGATCTATTTAGTAACATATTCAACATGGGCATTGGCTTTCTGGTATGGCTCTCTCTTAATTGCTAGGAATGAACTTGAAGGAGGTTCAGCTATTGCTTGTTTCTTTGGTGTCAATGTTGGGGGAAGAGGCTTGGCACTGGCACTTTCATATTTTGCACAATTTGCACAAGGGACTGTTGCAGCAAGTCGTGTATTCTTTATTATAGAGAGAATCCCTGAGATTGATCCCTATAACCCAGAGGGTAGGAGGCTTTCTTCTGTTCGTGGAAGGATTGAGTTGAAAAGTGTTAGTTTTGCATACCCTTCTCGGCCTGATTCTTTGATACTTCATTCCCTTAATTTGGTAATACAATCTTCAAAGACTGTGGCATTGGTTGGTGCAAGTGGAGGGGGCAAGTCCACTGTCTTTGCTCTCATAGAGAGGTTTTATGACCCTATTGAAGGCATTATTACCTTGGATGGTCATGATTTGAGGACATTGCAAGTAAAATGGCTACGTGATCAGATTGGGATGGTTGGTCAGGAGCCAGTTCTCTTTGCCACAAGTATACTAGAAAACGTGATGATGGGAAAAGATAATGCCACCGAGAAAGAGGCAATTGCTGCTTGCATTGCTGCTGATGCTCACAACTTCATCTCTAGCCTACCACTAAGCTATGACACACAGGTTGGAGACAGGGGTACAAAACTATCAGGAGGTCAAAAGCAGAGAATTGCATTGGCACGAGCAATGATCAAAGATCCAAAAATCCTTCTTTTAGATGAACCTACTAGTGCTCTTGATGCTGAATCAGAGTCAGCAGTGCAACGGGCCATTGACAAGATTTCTGCAGGCCGAACAACCATTGTAATTGCTCACAGGATAGCAACAGTTAAGAATGCTCATTCCATTGTGGTTCTTGAACATGGTTCTGTCACAGAGATTGGTGACCATCGCCAGCTTATGAGCAAAGCTGGAGCTTATTTCAACCTTGTCAAGCTTGCTACTGAAGCCATTTCAAAACCTCTCTCTAAAGAAAATGGCATGAAAAAAGGCAATGATTTATCCATCTATGATAAATCTATTAATGCATTATCAGGATCAAGATATGTAGGTGATATCACAATGCCTAAAAACTTAAAATCTACACAGAAGGAGGAGAAACAAGAAGACTTGGTTGATAATGAAAACAAAAAGTCAAGAAAATACAGACTTTCTGAGGTGTGGAAATTGCAAAAGCCGGAGATAGTGATTCTATTTTCAGGATTTCTTATGGGAATGTTTGCAGGTGCTTTTCTGTCCCTTTTCCCATTGGTTTTAGGCATATCTCTTGGAGTATACTTTGACAATGACACTCATAAGATGAAAAGAGATGTTGGGCACCTTTGTCTAGCACTTGTTGGCCTTGGATTTGGTTGTATACTTTCCATGACAGGACAACAAGGTTTGTGTGGCTGGGCTGGAACAAAGTTAACACAAAGGGTTAGAAACCTCTTGTTTCAATCCATACTGAAACAAGAACCTGGGTGGTTTGATTTTGAAGAAAACTCCACTGGAGTGTTGGTGTCAAGGCTCTCATTAGACTGTGTTAGCTTTCGATCAGTGCTTGGTGACAGATTCTCAGTCCTTCTTATGGGATTGAGTTCAGCTGCTGTTGGCCTTGGTGTGTCCTTTGTTTTTAACTGGAGACTAACCCTTGTGGCAGCTGCTGTAACTCCCTTGACTCTTGGTGCAAGCTACATAAGCTTGATCATAAATGTTGGACCACGAGTTGATAACAACTCTTATGCAAGAGCTAGCAATATTGCTTCTGGTGCAGTGTCAAACATAAGGACAGTTACTACATTTTCTGCTCAGGAACAAATAGTTAAGTCCTTTGATAGAGCCCTGTCAGAACCTAGGAGACAATCATTCAAAAGTTCACAAATTCAAGGTCTTACATTTGGGTTCTTTCAAGGTGCCATGTATGGAGCATACACCTGTACTCTTTGGTATGGTTCCTACCTTGTAGAACATGACCACGCAAAGTTTGGAGACATTTCCAAGATTTTTCTCATTCTTGTTTTGAGCTCATTTTCTGTGGGACAACTAGCTGGTTTGGCACCGGATACTTCTATGGCTGCTACAGCAATTCCTGCAGTTCAAGATATCATAAATCGTAGGCCACTAATTGGCAGTGATAGAAAAAAGGGTAGGAAAGTAGAAAGATCAAAGCCTTTCAACTTAGAATTTAAGATGGTGACATTTGCATACCCCTCTAGGCCTGAGATGACTGTGTTGAGGGATTTCTGTTTAAAGGTCAAAGGTGGAAGCACAGTGGCCTTGGTGGGACCAAGTGGATCAGGAAAGTCAACTGTCGTATGGTTGACTCAGAGGTTCTATGATCCAGACCAAGGAAAGGTGATGATGAGTGGGTTAGATTTGAGGGAGATTGATGTTAAGTGGTTAAGGAGGCAAGTAGCTTTGGTGGGTCAAGAACCTGCACTGTTTGCTGGTAGCATAAGGGACAATATTGCATTTGGGGACCCAAATGCTTCATGGGCTGAAATTGAAGCAGCTGCAGAAGAGGCTTACATCCACAAGTTCATCAGTGGCCTTCCTCAGGGTTACGAAACCCAGGTTGGTGAAAGCGGGGTCCAGTTATCCGGTGGTCAAAAACAAAGAATTGCTATAGCAAGGGCCATATTGAAGAAATCAAGGGTGCTTCTACTGGATGAAGCAAGCAGTGCCTTGGACTTGGAATCAGAGAAGCACGTCCAAGATGCCCTCAAGAATGTTTCCGAAGAGGCAACAACGATAATAGTTGCTCACCGGCTTTCAACAATCAGAGAAGTTGACAAGATCGCAGTTATGAGAGATGGGGAAGTGGTGGAGCATGGGAGCCATGACACTCTCATGGCTTCCTTTCAAAGTGGTTTGTATGCTAGCCTAGTTCGAGCTGAGACTGAAGCCAATGCCTTTTCATGA 4533 0.4251 MADSSSFEGDHYTSHHTRHYPTPVSYRSVSGSGSFIPSSSQSNATSRSRRASRNKVLTTPFASDDDNSWQEEVSWKFDATGLHEYSTNFGSILSPWPTSSPYDRSRVFRQSANDYYLSQTSRFRGPTNPSYEHSSYGRVELRSYVARDNVNDRSYFDQHSQPHGLSKLGITQERSGREDKSSPLAEEDELGMIDYSITDEPIISPYRNDHDLELPYVKHAHGGNYFVGDHGSPSYGSKSGSQLYGGGGGYSHHDIEKFSGYDEEGEEDMEEEDARPPKTVGLLSLFRYSTKWDLVLVFVGCLGALINGGSLPWYSYLFGELINKIAGADKDEVPMKDVEKICIYMAGLAAVVIVGAYLQIACWRLVGERSAQRIRTEYLRAVLRQDISFFDTEINTGDIMHGIASDVAQIQEVLGEKMAHFVHHIFTFIFGYVVGFRRSWKVSLAVFSVTPLTMFCGMAYKALYGGLAAKEEASYRKAGSIAEQAISSIRTVFSFVAESQLAEKYSELLQKSVPIGAKLGFAKGIGMGVIYLVTYSTWALAFWYGSLLIARNELEGGSAIACFFGVNVGGRGLALALSYFAQFAQGTVAASRVFFIIERIPEIDPYNPEGRRLSSVRGRIELKSVSFAYPSRPDSLILHSLNLVIQSSKTVALVGASGGGKSTVFALIERFYDPIEGIITLDGHDLRTLQVKWLRDQIGMVGQEPVLFATSILENVMMGKDNATEKEAIAACIAADAHNFISSLPLSYDTQVGDRGTKLSGGQKQRIALARAMIKDPKILLLDEPTSALDAESESAVQRAIDKISAGRTTIVIAHRIATVKNAHSIVVLEHGSVTEIGDHRQLMSKAGAYFNLVKLATEAISKPLSKENGMKKGNDLSIYDKSINALSGSRYVGDITMPKNLKSTQKEEKQEDLVDNENKKSRKYRLSEVWKLQKPEIVILFSGFLMGMFAGAFLSLFPLVLGISLGVYFDNDTHKMKRDVGHLCLALVGLGFGCILSMTGQQGLCGWAGTKLTQRVRNLLFQSILKQEPGWFDFEENSTGVLVSRLSLDCVSFRSVLGDRFSVLLMGLSSAAVGLGVSFVFNWRLTLVAAAVTPLTLGASYISLIINVGPRVDNNSYARASNIASGAVSNIRTVTTFSAQEQIVKSFDRALSEPRRQSFKSSQIQGLTFGFFQGAMYGAYTCTLWYGSYLVEHDHAKFGDISKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVQDIINRRPLIGSDRKKGRKVERSKPFNLEFKMVTFAYPSRPEMTVLRDFCLKVKGGSTVALVGPSGSGKSTVVWLTQRFYDPDQGKVMMSGLDLREIDVKWLRRQVALVGQEPALFAGSIRDNIAFGDPNASWAEIEAAAEEAYIHKFISGLPQGYETQVGESGVQLSGGQKQRIAIARAILKKSRVLLLDEASSALDLESEKHVQDALKNVSEEATTIIVAHRLSTIREVDKIAVMRDGEVVEHGSHDTLMASFQSGLYASLVRAETEANAFS* 1511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1098 1510 CDD ABC_6TM_Pgp_ABCB1_D2_like 931 1246 - -
Apr10g1098 1510 ProSitePatterns ABC transporters family signature. 759 773 IPR017871 GO:0005524
Apr10g1098 1510 CDD ABC_MTABC3_MDL1_MDL2 620 857 - -
Apr10g1098 1510 MobiDBLite consensus disorder prediction 154 189 - -
Apr10g1098 1510 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 611 856 IPR027417 -
Apr10g1098 1510 SMART AAA_5 647 848 IPR003593 -
Apr10g1098 1510 SMART AAA_5 1291 1477 IPR003593 -
Apr10g1098 1510 MobiDBLite consensus disorder prediction 18 66 - -
Apr10g1098 1510 MobiDBLite consensus disorder prediction 172 187 - -
Apr10g1098 1510 Gene3D - 610 858 IPR027417 -
Apr10g1098 1510 Gene3D - 907 919 IPR027417 -
Apr10g1098 1510 Gene3D - 1253 1504 IPR027417 -
Apr10g1098 1510 MobiDBLite consensus disorder prediction 1 66 - -
Apr10g1098 1510 SUPERFAMILY ABC transporter transmembrane region 278 605 IPR036640 GO:0005524|GO:0016021
Apr10g1098 1510 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 944 1228 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr10g1098 1510 PANTHER - 97 1509 - -
Apr10g1098 1510 Pfam ABC transporter transmembrane region 942 1211 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr10g1098 1510 Pfam ABC transporter transmembrane region 297 567 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr10g1098 1510 Pfam ABC transporter 638 787 IPR003439 GO:0005524
Apr10g1098 1510 Pfam ABC transporter 1283 1430 IPR003439 GO:0005524
Apr10g1098 1510 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 298 585 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr10g1098 1510 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1259 1501 IPR027417 -
Apr10g1098 1510 CDD ABC_6TM_Pgp_ABCB1_D1_like 298 593 - -
Apr10g1098 1510 ProSitePatterns ABC transporters family signature. 1403 1417 IPR017871 GO:0005524
Apr10g1098 1510 Gene3D ABC transporter type 1, transmembrane domain 1230 1507 IPR036640 GO:0005524|GO:0016021
Apr10g1098 1510 Gene3D ABC transporter type 1, transmembrane domain 284 872 IPR036640 GO:0005524|GO:0016021
Apr10g1098 1510 Gene3D ABC transporter type 1, transmembrane domain 921 1229 IPR036640 GO:0005524|GO:0016021
Apr10g1098 1510 CDD ABC_MTABC3_MDL1_MDL2 1265 1502 - -
Apr10g1098 1510 PANTHER ABC TRANSPORTER B FAMILY 97 1509 - -
Apr10g1098 1510 SUPERFAMILY ABC transporter transmembrane region 924 1244 IPR036640 GO:0005524|GO:0016021
Apr10g1098 1510 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 620 856 IPR003439 GO:0005524
Apr10g1098 1510 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1264 1500 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1098 Apr-Chr10 23335851 23351901 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1098 972 1507 Calmodulin-binding Proteins AT2G36910 37.918 1.39e-104 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1098 K05658 - gmx:100816700 2441.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1098 10 23335851 23351901 Apr10g1098 10 23335851 23351901 ECH