Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1095 ATGGCTACCAAAGATTCACCTCTGCAGCTTCCAGAACTTAGCATCCAATCTGAAGAATCCGACACGGGTTCTGACTGGGACAATTCCGAAAAAGGCCCCGATTATGATCTGCTCGAAGAAACCCAAATCAACTTTTCAAACCTCTCACTTAAGAAGGCAAAAGCACGCATTGTGAAAGATAAGGGTCTATGTAGTGAGACAGCGCCAGAGGCGATCGATGTGACTGCATCTTTTGTTGATGAGGAGGGTTATGAGAAAGTTCAAAAAATAATCGAAGCGGGGCTGCTAGAGAAATTGAAAGTGGATGAGTGCAAGGTGTATTTGAGGAAGCATGGTCTGAGGTTAACTGGAAACAAAGACACACTCCTACAGCGCATAAAGGAACATTTAGAGATTTTAAATGGTGGAGGGGAGAAAAAATACCCGCGTTTTAGCTTTGTGTTGAATTGCAAAGGTGATGCATGCACTGGTGATGTTGTTTTGTTTGAGCAAAATGTCTATGAAATGTTCAACATAGCATCCAGGAGTGCCAGTGGTCCACCATGTGGCAAAAGGATTGTTGCAGGCCGCATAGTGAAGGAAAGCTATGGTGCTGCCAAACAACAGCATACCTTTACGATTGAAGTGCTCTGGAGCAAGGGAGAAAAGCCTCTCCCTCCCCTGTACCCCCTTCTGATTAAGGGTCGAAATCTTTATAGGTTGAAGACTTTGAGACAGAAATGGGAAGATGAAGCAAAAAGGCTGAAAATATTGATGGAAAAACACTCGAGGGGATCTTTTGCTAGGGCAGATAGAGAAGCAAGGATTCAAGAAAAGGAGAAGAGGAAAACAAATATGGAAAACAGGGTCTCCAAACAGGTTTCAGTAAAGAACCAATGTCAATCACATTCACACGTTACAATGTCACCATATCAACCTCAAGAAAGAAATGTATCCATTAATCCAGAGAAGTCAGAATTTCCATCTCAAAATTCAGGCTTATCTGCCAACATAAGAAAAGAAGCATGTGTTATTGTAAATAAACCAGCAGCTGTAACTGAACAACACGGAATGTCTTTTGATTCTAAAACCGTGGCAATGAGATCTGACCAGTTAGCAAGTTCAGGAAGAACATCATTTACACACCATATACATAATCAACAAACTTGGAAGCACCCATCTGATTATAGGAGTACTTTTGCTATTGATCATATGAGGGGAGCTGAACTTGGTGCAAACTACAATTATGTTGATCTGCATTCCAGAGAAAAACCAACCTTTATTGAGAAAAACCAGAACTTGGTGCAAACAACTTGGAAGGCTCATCACATGCCGCTGGCAAATGCAAATCAGGTTCACCCTTTAATGCCCAACAGAAGCTATAAGCCAAACCAGCTGTGTAGACATTATTCCCGTGGGTGGTGCCGTTTTGGGGACAATTGCAAATTTTTACATGATTTTAGAGGCAAAAGGAACGCGTGA 1461 0.4189 MATKDSPLQLPELSIQSEESDTGSDWDNSEKGPDYDLLEETQINFSNLSLKKAKARIVKDKGLCSETAPEAIDVTASFVDEEGYEKVQKIIEAGLLEKLKVDECKVYLRKHGLRLTGNKDTLLQRIKEHLEILNGGGEKKYPRFSFVLNCKGDACTGDVVLFEQNVYEMFNIASRSASGPPCGKRIVAGRIVKESYGAAKQQHTFTIEVLWSKGEKPLPPLYPLLIKGRNLYRLKTLRQKWEDEAKRLKILMEKHSRGSFARADREARIQEKEKRKTNMENRVSKQVSVKNQCQSHSHVTMSPYQPQERNVSINPEKSEFPSQNSGLSANIRKEACVIVNKPAAVTEQHGMSFDSKTVAMRSDQLASSGRTSFTHHIHNQQTWKHPSDYRSTFAIDHMRGAELGANYNYVDLHSREKPTFIEKNQNLVQTTWKAHHMPLANANQVHPLMPNRSYKPNQLCRHYSRGWCRFGDNCKFLHDFRGKRNA* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1095 486 Coils Coil 262 282 - -
Apr10g1095 486 Pfam SAP domain 96 130 IPR003034 -
Apr10g1095 486 SUPERFAMILY SAP domain 85 131 IPR036361 -
Apr10g1095 486 MobiDBLite consensus disorder prediction 1 33 - -
Apr10g1095 486 SMART sap_9 96 130 IPR003034 -
Apr10g1095 486 Gene3D SAP domain 96 135 IPR036361 -
Apr10g1095 486 ProSiteProfiles SAP motif profile. 96 130 IPR003034 -
Apr10g1095 486 ProSiteProfiles Zinc finger C3H1-type profile. 454 481 IPR000571 GO:0046872
Apr10g1095 486 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 62-LIKE 12 481 - -
Apr10g1095 486 MobiDBLite consensus disorder prediction 282 309 - -
Apr10g1095 486 SMART c3hfinal6 455 480 IPR000571 GO:0046872
Apr10g1095 486 MobiDBLite consensus disorder prediction 1 22 - -
Apr10g1095 486 Gene3D - 448 485 - -
Apr10g1095 486 MobiDBLite consensus disorder prediction 273 309 - -
Apr10g1095 486 Pfam CCCH-type zinc finger 459 479 IPR041367 -
Apr10g1095 486 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 12 481 IPR045124 GO:0003723|GO:0045892
Apr10g1095 486 SUPERFAMILY CCCH zinc finger 455 479 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1095 Apr-Chr10 23319935 23323328 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr10g1095 SAP 1.5e-09 CL0306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1095 - - gmx:100815642 617.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1095 10 23319935 23323328 Apr10g1095 10 23319935 23323328 ECH