Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1089 ATGCAGAATCACAGGTTGAAGCAGCAACAGCAGCAGCAGCAGCAAGCTCTGATGCAACAAGCTCTTCTTCAACAGCAATCTCTCTACCACCCTGGCCTCTTAGCTCCTCCCCAGATTGAACCAATTCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTGGGGAATATCCATACACAGGTAACTGAGCCACTTTTACAAGAAGTTTTTGCAGGCACTGGCCCAGTTGAAGGTTGTAAACTTATTAGAAAGGAGAAGTCATCCTATGGATTCATTCATTACTTTGACCGCAGATCTGCGGCCCTTGCCATATTATCTCTCAATGGAAGACATTTATTTGGGCAGCCTATCAAAGTTAACTGGGCATATGCTAGTGGTCAAAGAGAGGATACATCAGGTCACTACAACATATTTGTCGGTGATCTCAGTCCTGAAGTTACTGATGCTACACTCTTTGCATGCTTTTCTGTTTACCCCAGTTGTTCAGATGCAAGGGTTATGTGGGATCAAAAGACTGGACGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAATCAACAGGACGCTCAAAGCGCTATAAATGATTTGACTGGTAAGTGGCTTGGAAGTAGACAAATACGCTGTAACTGGGCAACAAAAGGTGCTGGTGGTAATGAAGAGAAGCAAAACTCAGATGCCAAAAGTGTGGTGGAACTAACAAATGGCTCCGAAGATGGTAAAGAGACATCTAACAGTGATGCTCCTGAGAACAATCCTCAGTATACTACTGTTTATGTGGGTAACCTTGCTTCAGAGGTAACACAACTTGATCTCCATCGCCACTTCCATGCTCTTGGGGCTGGAGTGATAGAGGAGGTTCGTGTCCAGCGTGATAAAGGGTTTGGTTTTGTGAGGTACAGTAGTCACGCCGAAGCAGCTTTGGCTATTCAGATGGGAAATGCACAGTCTCTTCTCTGTGGCAAACAAATTAAGTGTTCTTGGGGGAGCAAGCCTACTCCACCTGGAACTGCTTCAAATCCTCTTCCCCCACCTGCTGCTGCATCTCTGCCAGGTCTCTCTGCGACCGATCTTTTGGCCTATGAGCGACAACTGGCAATGAGCAAGATGGGTGGTGTCCATGCCTTGATGCATCCTCAAGGGCAACATCCTCTTAAACAGGCAGCTATTGGAGCAAGCCAGGCAATATATGATGGTGGGTTCCAGAATGTTGCAGCTGCACAGCAAATGATGTACTACCAGTAA 1263 0.4624 MQNHRLKQQQQQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFAGTGPVEGCKLIRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGNEEKQNSDAKSVVELTNGSEDGKETSNSDAPENNPQYTTVYVGNLASEVTQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSSHAEAALAIQMGNAQSLLCGKQIKCSWGSKPTPPGTASNPLPPPAAASLPGLSATDLLAYERQLAMSKMGGVHALMHPQGQHPLKQAAIGASQAIYDGGFQNVAAAQQMMYYQ* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1089 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 337 IPR000504 GO:0003723
Apr10g1089 420 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 8 401 - -
Apr10g1089 420 SMART rrm1_1 58 127 IPR000504 GO:0003723
Apr10g1089 420 SMART rrm1_1 143 216 IPR000504 GO:0003723
Apr10g1089 420 SMART rrm1_1 263 333 IPR000504 GO:0003723
Apr10g1089 420 SUPERFAMILY RNA-binding domain, RBD 41 135 IPR035979 GO:0003676
Apr10g1089 420 SUPERFAMILY RNA-binding domain, RBD 252 344 IPR035979 GO:0003676
Apr10g1089 420 CDD RRM1_TIA1_like 59 129 - -
Apr10g1089 420 Gene3D - 242 341 IPR012677 -
Apr10g1089 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 142 220 IPR000504 GO:0003723
Apr10g1089 420 CDD RRM2_PUB1 143 217 - -
Apr10g1089 420 SUPERFAMILY RNA-binding domain, RBD 136 225 IPR035979 GO:0003676
Apr10g1089 420 MobiDBLite consensus disorder prediction 240 261 - -
Apr10g1089 420 Gene3D - 140 241 IPR012677 -
Apr10g1089 420 CDD RRM3_TIA1_like 262 337 - -
Apr10g1089 420 Coils Coil 6 26 - -
Apr10g1089 420 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 8 401 - -
Apr10g1089 420 Gene3D - 1 139 IPR012677 -
Apr10g1089 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 264 323 IPR000504 GO:0003723
Apr10g1089 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 144 214 IPR000504 GO:0003723
Apr10g1089 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 59 125 IPR000504 GO:0003723
Apr10g1089 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 57 131 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1089 Apr-Chr10 23269903 23276501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1089 52 338 Eukaryotic Initiation Factors Gene Family AT4G34110 27.815 9.02e-22 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1089 K13201 - gmx:100781227 790.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1089 10 23269903 23276501 Apr10g1089 10 23269903 23276501 ECH