Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1088 ATGTCAACTTTCCCCAATACGCTCTCCGATGGCCGCAGGTCCGGCAAGGCACCGGACAAGTCCAATTTTTCTCAGACCTGTAGCCTCTTGAGCCAGTTCTTGAAGGAAAAACGTGGTTCTGGAGATTCCACCCTTGGAATTGCTGGAAAAATGGAACCTAGAGCGGGTACCAAGGATTTGTTAACCAACCTGCAAAACTCAGAAGGGGCTTTGAGACTAAGTGCTTCTGCTATGGAGTTTCTTCCCCAGCTTGTGGAAAATCCCTGCATTAAGAAGTCTAACGTTAGGTCACCAGGACCTGAATCTCCCCAATTGACAATATTCTATGCCGGGAAAATGTTAGTGTTTGATGCTTTTTCGCCTGAGAAGGCCACGGAGGTCATGGAGTTGGCCACCAAGTTAGCCTCTGACAGTTCCGGCACCGAAGAAACTCCACCTAGTGCTCCGGTTACTACTGAAAAATTGACCGTGTCCAAAGTGTCTCAGACAAATTCTGCCTCAGAAACTCCTAGATCAGGAAACCAAGCTGTTGGTTCAGATATGAGGTATCCAAGGAGAGCTTCACTTGTAAAATTTCTTGAGAAGCGGAAAGAAAGGAGGGTGAATGCTAGAGGGCCATACCAAATTAACAACCACAAACCTGAGGGAAGCGGTTCAGGAGGTGAACCTAAAGATCAGTGTTCCAAACACTTTGACCTTAACTTGTAG 708 0.4689 MSTFPNTLSDGRRSGKAPDKSNFSQTCSLLSQFLKEKRGSGDSTLGIAGKMEPRAGTKDLLTNLQNSEGALRLSASAMEFLPQLVENPCIKKSNVRSPGPESPQLTIFYAGKMLVFDAFSPEKATEVMELATKLASDSSGTEETPPSAPVTTEKLTVSKVSQTNSASETPRSGNQAVGSDMRYPRRASLVKFLEKRKERRVNARGPYQINNHKPEGSGSGGEPKDQCSKHFDLNL* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1088 235 MobiDBLite consensus disorder prediction 187 203 - -
Apr10g1088 235 MobiDBLite consensus disorder prediction 134 235 - -
Apr10g1088 235 MobiDBLite consensus disorder prediction 134 176 - -
Apr10g1088 235 ProSiteProfiles Tify domain profile. 98 133 IPR010399 -
Apr10g1088 235 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 8 229 - -
Apr10g1088 235 Pfam tify domain 100 131 IPR010399 -
Apr10g1088 235 MobiDBLite consensus disorder prediction 1 23 - -
Apr10g1088 235 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 8 229 IPR040390 -
Apr10g1088 235 SMART tify_2 98 133 IPR010399 -
Apr10g1088 235 Pfam Jas motif 185 208 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1088 Apr-Chr10 23261332 23263939 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1088 12 209 Tify Gene Family AT1G19180 34.375 1.30e-20 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Apr10g1088 tify 1.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1088 K13464 - gmx:100778559 386.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1088 10 23261332 23263939 Apr10g1088 10 23261332 23263939 ECH