Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1072 ATGCCTTCAAAGAGGCTTCAATGGAAATCCTTAGTACTTGGCTGTTTTCAAGCTAAGAACCCTTCTTTGGAAGCTCCAAATATAGTTTCCAAAAAAACATCTTCAAGTAGAATCTCCCTCTCTGATTTAAGCAATTACTCATCACTCTCTATCATGAGTGATTTGTCCAATTCTCTTGTGGGATCAAATCTTCATATTTTCACTTGTCAAGAGCTCAAAGAGATCACACACAACTTCAGCAAATCAAACTTTCTAGGGGAAGGGGGGTTTGGGAAGGTATATAAAGGGTTTATAGATGACAATCTTAGGCCTAGATTGGAAGCACAGGCTGTTGCAGTTAAGGCCTTGAACTTGGATGGAAAACAAGGCCACAGGGAGTGGTTGGCTGAAGTAATCTTTCTGGGGCAGTTGAAGCATCGCCATCTGGTTAACTTAATTGGATATTGCTGTGAAGATGAGCACAGGCTTCTTGTGTATGAATACATGGAGCGGGGCAATCTAGAGGAGAAGCTTTTCAAAGGTTATTTAGCAACCTTGCCTTGGCTAACAAGAATCAAAATCGCAATTGGAGCTGCAAAGGGACTTGCTTTTCTTCATGAAGAAGAAAAACCAGTCATATATAGAGATGTTAAGGCCTCAAACATTCTATTGGATGCTGATTACAATGCCAAGCTCTCAGATTTTGGTTTAGCAATAGATGGACCAGAAAAAGACCAAACACATGTTACAACTCGTGTGATGGGTACCCGTGGTTATGCTGCTCCTGAGTATATAATGACAGGCCATTTGACAACAATGAGCGATGTATATAGCTTTGGAGTTGTTCTCTTAGAGCTTCTCACAGGAAAGAAATCAGTGGACAAGAAAAGACCCACTAGAGAGCAAGATTTGGTAGAATGGGCAAGGCCTCAATTGAAGGACTCCCACAAACTTGAAAGAATAATTGACCCAAGACTTGATGATCAATACTCAATTGAAGGGGCTAAAAAATTTGCAGCCTTGGCTTATCAATGTCTAAGCTATCATGCAAAGAGTAGACCCACTATGCGAACCGTGGTTAAGACCTTAGAGCCTCTCATGGAATTGAAAGATATCCCAATTGGCCATTTTGTTTATGTTGTACCCAATGAAGATTCACTCAAAGTGAATAATGCAAAAGGAACAGAAAATGGCCATGATGAGATTGAGATCAATGAAGTTGATGTAAAAACTAAAGAAGAGGAAAAGAAAAAGGAGAAGGGTCACCACAGGCAACGCAAAAGTCGTAGCAATAGACGTAGGGTTAAGCCATTAAGGTCTCGTGCTGTTTACTCTGACACTGCTCTGTATAAGACTCTTGGTACCAGTCTCTATTCTCCCAAACAAGCACCACAAGGAGATGCACTAGATTGA 1392 0.408 MPSKRLQWKSLVLGCFQAKNPSLEAPNIVSKKTSSSRISLSDLSNYSSLSIMSDLSNSLVGSNLHIFTCQELKEITHNFSKSNFLGEGGFGKVYKGFIDDNLRPRLEAQAVAVKALNLDGKQGHREWLAEVIFLGQLKHRHLVNLIGYCCEDEHRLLVYEYMERGNLEEKLFKGYLATLPWLTRIKIAIGAAKGLAFLHEEEKPVIYRDVKASNILLDADYNAKLSDFGLAIDGPEKDQTHVTTRVMGTRGYAAPEYIMTGHLTTMSDVYSFGVVLLELLTGKKSVDKKRPTREQDLVEWARPQLKDSHKLERIIDPRLDDQYSIEGAKKFAALAYQCLSYHAKSRPTMRTVVKTLEPLMELKDIPIGHFVYVVPNEDSLKVNNAKGTENGHDEIEINEVDVKTKEEEKKKEKGHHRQRKSRSNRRRVKPLRSRAVYSDTALYKTLGTSLYSPKQAPQGDALD* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1072 463 Gene3D Transferase(Phosphotransferase) domain 1 162 366 - -
Apr10g1072 463 ProSitePatterns Protein kinases ATP-binding region signature. 85 114 IPR017441 GO:0005524
Apr10g1072 463 SUPERFAMILY Protein kinase-like (PK-like) 54 357 IPR011009 -
Apr10g1072 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Apr10g1072 463 ProSiteProfiles Protein kinase domain profile. 79 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1072 463 SMART serkin_6 79 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1072 463 PANTHER OS01G0588500 PROTEIN-RELATED 27 417 - -
Apr10g1072 463 PANTHER BNAA02G16030D PROTEIN 27 417 - -
Apr10g1072 463 Gene3D Phosphorylase Kinase; domain 1 39 161 - -
Apr10g1072 463 MobiDBLite consensus disorder prediction 404 434 - -
Apr10g1072 463 MobiDBLite consensus disorder prediction 414 431 - -
Apr10g1072 463 Pfam Protein tyrosine and serine/threonine kinase 82 356 IPR001245 GO:0004672|GO:0006468
Apr10g1072 463 CDD STKc_IRAK 85 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1072 Apr-Chr10 23099132 23101389 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1072 65 370 Glycoside Hydrolase AT3G07070 49.518 2.92e-97 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Apr10g1072 PK_Tyr_Ser-Thr 4.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1072 - - gmx:100790454 720.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2415 1 33760344 33762630 Apr10g1072 10 23099132 23101389 ECH
Apr10g1072 10 23099132 23101389 Apr10g1072 10 23099132 23101389 ECH