Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1069 ATGAATGAACGATCAATGTCCTCTCAGGACCAAGCCCTAGTTTCCCTTCTCTCCCAACTCGCACTTTCCTGCGACGGTGCCGTTTTGGGCTTCGCCTTGGCCTACGTCGCCGTTCGCTCTCTTCTCAAATTCACCGCCTCCTCCGCCGCCCTCCGCAAGCTCCGCCACGCTCCTTCCCTCTCCGTCTCCGACCTCCGATCCCTTCTCACCGAGACAACCTCCGACGCCGACGGAAACTCCGACGATGGCAAAATCGTTATTATCCGCGGCACCGTCGACGCTAAATCCGCCGTCGACGGCAGCTGGAAAACCTTGAGGCCTGGCGTGTTGGTTTCTCGCGAGTCCGGTGACAAAGGCGTCGTCCTTCAACGAACTCAAACGTGTATATACAATGAATGGAAGGGCTTATTTGGATGGACTTCTGATCTTCGAGCCATATTTGCAAGATCTTGGAGACAACAAGAGTCTACATCCTTTAGAAAGGTGCCTTTTGTTCTTGTTGATGTTGGACGGCGGCCAAATACTGAATATGTTGTTGTCAACTTGGATGGCTCAAGGCATCCATTACCTCTGACAACAGTCTATCATAAATTGCAACCAATAAGTGCTTCTCCTTATACTTTCTTGCAAGCACTTTTTGGTCATGAATATCCGGTTGGACTACTAGATGAAGAGAAAATTCTTCCACTGGGGAAGGATATTACTGCTGTTGGCTTTTGCAGTTTAAAAAACGGTATTACTGAAATTAAGTCATGCAAAGATCTACCATATTTTTTGAACTGGAATAAGTGGAGGCGGTGGAAGCAACAGAGGCAGCTCCAGCAACAAAGGCAAGCGGTCAGTGACGTTGATCCTCAGATGGATGATGAAATTGAAGATGTTCCAGATGGACAACTGTGTGTTATATGCTTGATGAGGAGAAGGCGCTCTGTTTTCATCCCCTGTGGGCATCTTGTGTGTTGCCAAGGTTGTGCCATTTCAGTTGAACGTGAAGTGGCACCCAAGTGTCCTGTTTGTCGTCAGGAGATTCGAGATTCAGTGCGGATATTTGAATCTTGA 1059 0.4835 MNERSMSSQDQALVSLLSQLALSCDGAVLGFALAYVAVRSLLKFTASSAALRKLRHAPSLSVSDLRSLLTETTSDADGNSDDGKIVIIRGTVDAKSAVDGSWKTLRPGVLVSRESGDKGVVLQRTQTCIYNEWKGLFGWTSDLRAIFARSWRQQESTSFRKVPFVLVDVGRRPNTEYVVVNLDGSRHPLPLTTVYHKLQPISASPYTFLQALFGHEYPVGLLDEEKILPLGKDITAVGFCSLKNGITEIKSCKDLPYFLNWNKWRRWKQQRQLQQQRQAVSDVDPQMDDEIEDVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVEREVAPKCPVCRQEIRDSVRIFES* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1069 352 Pfam Zinc finger, C3HC4 type (RING finger) 298 345 - -
Apr10g1069 352 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Apr10g1069 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 283 352 IPR013083 -
Apr10g1069 352 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 260 352 IPR044247 GO:0004842
Apr10g1069 352 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 6 259 IPR044247 GO:0004842
Apr10g1069 352 ProSiteProfiles Zinc finger RING-type profile. 300 340 IPR001841 -
Apr10g1069 352 SMART ring_2 300 339 IPR001841 -
Apr10g1069 352 SUPERFAMILY RING/U-box 299 345 - -
Apr10g1069 352 Pfam E3 Ubiquitin ligase 146 261 IPR022170 GO:0004842|GO:0006996|GO:0016567
Apr10g1069 352 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 260 352 - -
Apr10g1069 352 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 6 259 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1069 297 349 C3H Transcription Factor Family AT3G06140 39.623 1.95e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1069 K15688 - gmx:100811939 578.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1069 10 23062639 23066959 Apr10g1069 10 23062639 23066959 ECH