Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1063 ATGATGAGTGCGAGTGCAAGTGCGAGTGCAAGTGCAAGAAATAGGTCTCCTTTCACACCAACTCAGTGGCAAGAGCTTGAACAACAAGCTCTTGTTTTTAAGTACATGGTTACAGGAACACCTATTCCACCAGATCTCATATTCTCTATTAAAAGAAGTTTAGACTCTTCAATTTCTTCAAGGCTTTTCCCACATCATCCCATTGGGTGGGGATGTTTTGAAATGGGATTTGGCAGAAAAGTAGACCCAGAACCAGGAAGGTGCAGAAGAACAGATGGCAAGAAATGGAGATGCTCAAAGGAAGCATATCCAGACTCAAAGTACTGTGAAAGACACATGCACAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAGTTTCTTCAACTACAACCACCGCCACAAATCCCTCCTCTCAATCTTACAACAGAAACCTTTCCTTGACCAATCCCAACATCACTTCACCCTCTTCTTTCCCTTTCTCTCCATTGCCTTCTTCTATACCTTGTGAGTCTCAACCCTTTTCTCAATCTTACCAAAATCCCTTCTTTTACTCCCAATCAACCTCTTCTAGACCCCCGGATTCTGATTTTCCACCTCAAGATGCCACTACCCATCACCTTTTTATGGACTCCGGGTCTTATTCTCAGGATGAAAAGGATTATAGGCATGTTCATGGAATAAGGGAGAGTGTGGATGAAAGAGCTTTCTTCCCAGAAGCTTCAGGGTCTGCTAGGAGCTATCCTGATTCATATCAAAACCTATCAATGAGCTCATACAAGTCCTATTCAAACTCCAGCTTCCAGAACATGAATGATAACCCAAGACAACAAGAGCAACAACAACAACACTGCTTTGTTTTGGGAACTGACTTCAAATCAACAAGACCAAGCAAAGAGAAAGAAACCGAGACAAGCCAAAGACCCCTTCATCACTTCTTTGGGGAGTGGCCCCCAAAGAATACAGATTCATGGCTAGATCTTGCTTCCAACTCCAGAATCCAAACCGATTGA 1011 0.4332 MMSASASASASARNRSPFTPTQWQELEQQALVFKYMVTGTPIPPDLIFSIKRSLDSSISSRLFPHHPIGWGCFEMGFGRKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEVSSTTTTATNPSSQSYNRNLSLTNPNITSPSSFPFSPLPSSIPCESQPFSQSYQNPFFYSQSTSSRPPDSDFPPQDATTHHLFMDSGSYSQDEKDYRHVHGIRESVDERAFFPEASGSARSYPDSYQNLSMSSYKSYSNSSFQNMNDNPRQQEQQQQHCFVLGTDFKSTRPSKEKETETSQRPLHHFFGEWPPKNTDSWLDLASNSRIQTD* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1063 336 PANTHER - 10 335 IPR031137 GO:0005634|GO:0006351|GO:0032502
Apr10g1063 336 MobiDBLite consensus disorder prediction 290 336 - -
Apr10g1063 336 MobiDBLite consensus disorder prediction 180 218 - -
Apr10g1063 336 ProSiteProfiles QLQ domain profile. 17 52 IPR014978 GO:0005524|GO:0005634|GO:0006355
Apr10g1063 336 MobiDBLite consensus disorder prediction 262 281 - -
Apr10g1063 336 ProSiteProfiles WRC domain profile. 82 126 IPR014977 -
Apr10g1063 336 PANTHER GROWTH-REGULATING FACTOR-LIKE PROTEIN 10 335 - -
Apr10g1063 336 SMART QLQ_2 16 52 IPR014978 GO:0005524|GO:0005634|GO:0006355
Apr10g1063 336 MobiDBLite consensus disorder prediction 180 197 - -
Apr10g1063 336 MobiDBLite consensus disorder prediction 123 159 - -
Apr10g1063 336 MobiDBLite consensus disorder prediction 293 308 - -
Apr10g1063 336 MobiDBLite consensus disorder prediction 109 159 - -
Apr10g1063 336 Pfam WRC 83 125 IPR014977 -
Apr10g1063 336 MobiDBLite consensus disorder prediction 1 21 - -
Apr10g1063 336 Pfam QLQ 17 50 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1063 Apr-Chr10 23026635 23028168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1063 1 315 GRF Transcription Factor Family AT3G13960 42.895 3.28e-73 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Apr10g1063 WRC 1.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1063 - - vun:114166369 560.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1063 10 23026635 23028168 Apr10g1063 10 23026635 23028168 ECH