Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1061 ATGAGTAACTGGTTGGGGTTCTCTCTGACTCCACACTTGAGGATTGATGAAGAATTTGGGAGAGAAAACCAAGAGCGTGGAGGAGGTTATCCTCCTCCTTCTTCTCATCCTCATCCTCACCCTCACCCTCCTTCTTCTCACCCTCACTTGTCTGTTATGCCTTTGCGCTCTGATGGCTCTCTCTGTGTTTCTGACTCCTTTAGGCACTCAGCTGCACCTGAAGAATGGAGATATGATAATGCAATAGGGGGAGGGAATTCAAATGAAGAAGGTCCAAAGCTTGAAGACTTCTTGGGTTGCTACTCAAACTCAACCATGGCTGAATCTAAAGTCTTCTGCCCAGACTCACAACATGACCAAAACCAAAACCAGAATAACATTTCTAAAATCAATGTTAATGTTGCACCAAGCTTTTGCACCAATGCAGAGATTGAAACTGGGGAGAATCTCACAAACCCTTCTTCCTTGCTCCACTCTTTCCATGCATACAATGATAGCTCACATACCCTTATACCCACCAATGGCATGTACAAGTCTTGGTTGGCTCAAACTCAGTTTTCTGAGGGAAAACCTTCACCTGAGGCAAATGGATGTAATTTTCAATCTCTGTCCCTCACTATGAGTCCTAGTGTACAAAATGGGGTGGGTGCAATTTCCACTGTTCAAGTGAATGAAGACAATCGAAAACGGGTCATGGCAAAATCTCATGCTAGAGAACCAGTCCCTCGCAAATCCATTGACACTTTTGGCCAGAGAACATCTCAATATCGTGGTGTTACAAGGCATAGATGGACTGGGAGATATGAGGCCCATTTGTGGGATAATAGCTGCAGAAAGGAAGGGCAAACAAGGAAAGGAAGGCAAGGTGGCTATGATAAGGAAGAAAAAGCAGCAAGGGCTTATGACTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTTTAAGCACTTATGAGAAGGAACTTGAAGAGATGAAGCACATGACCAGGCAAGAATTTGTCGCCAATTTAAGAAGGAAGAGCAGTGGATTTTCTAGAGGGGCATCTGTGTATAGAGGGGTGACAAGACACCATCAACATGGAAGGTGGCAGGCTCGGATAGGAAGGGTGGCAGGCAATAAGGACTTGTATCTTGGTACATTTAGTACACAAGAAGAAGCTGCAGAAGCATATGATATAGCAGCAATCAAGTTCAGAGGAACAAGTGCTGTGACCAACTTTGACATAAGTAGGTATGATGTGAAGAGAATTTGCTCAAGCTCAACTCTCATTGCTGGAGATCTTGCTAAAAGGTCTCCTAAAGACTCGGCTCAAGTTGCAGCCGAGGACTATAATTCTTGTGGTTCATCAACACCTCAGCCACCACCTATGGCCATAACCGATGGCCGTGAACACTCGGACGAGCTGTCCAACATGGTGTGGAATGCCAGCAGTGATGAGCAGGCACAGAATGAGAATGGAAACATTGACAATGTCACTGATCCATCACAACGGGTTTCACCAAACAAGGATGCTTTGAACCCCCAAAGCCCCAAGTGTTCTGTGGGGCTACCACCCAATGAGTTTGCAGTGAGTGGAGCAGATTATGGACATGGGTACTTTACCCTTGATGGACCAAAATACGATGATGGAAACAATGAAAATGACCACATGAACAATAACAGGCTCGGAAATATGGGATTGGTTAATCAAGTTCCCATGTTTGCTTTGTGGAATGAATGA 1734 0.4481 MSNWLGFSLTPHLRIDEEFGRENQERGGGYPPPSSHPHPHPHPPSSHPHLSVMPLRSDGSLCVSDSFRHSAAPEEWRYDNAIGGGNSNEEGPKLEDFLGCYSNSTMAESKVFCPDSQHDQNQNQNNISKINVNVAPSFCTNAEIETGENLTNPSSLLHSFHAYNDSSHTLIPTNGMYKSWLAQTQFSEGKPSPEANGCNFQSLSLTMSPSVQNGVGAISTVQVNEDNRKRVMAKSHAREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQGGYDKEEKAARAYDLAALKYWGPTTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKDSAQVAAEDYNSCGSSTPQPPPMAITDGREHSDELSNMVWNASSDEQAQNENGNIDNVTDPSQRVSPNKDALNPQSPKCSVGLPPNEFAVSGADYGHGYFTLDGPKYDDGNNENDHMNNNRLGNMGLVNQVPMFALWNE* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1061 577 PRINTS Ethylene responsive element binding protein signature 256 267 IPR001471 GO:0003700|GO:0006355
Apr10g1061 577 PRINTS Ethylene responsive element binding protein signature 394 414 IPR001471 GO:0003700|GO:0006355
Apr10g1061 577 MobiDBLite consensus disorder prediction 32 48 - -
Apr10g1061 577 MobiDBLite consensus disorder prediction 15 55 - -
Apr10g1061 577 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 479 - -
Apr10g1061 577 MobiDBLite consensus disorder prediction 441 472 - -
Apr10g1061 577 CDD AP2 353 414 IPR001471 GO:0003700|GO:0006355
Apr10g1061 577 SUPERFAMILY DNA-binding domain 353 414 IPR016177 GO:0003677
Apr10g1061 577 MobiDBLite consensus disorder prediction 446 460 - -
Apr10g1061 577 Gene3D AP2/ERF domain 354 414 IPR036955 GO:0003700|GO:0006355
Apr10g1061 577 Gene3D AP2/ERF domain 254 320 IPR036955 GO:0003700|GO:0006355
Apr10g1061 577 ProSiteProfiles AP2/ERF domain profile. 354 412 IPR001471 GO:0003700|GO:0006355
Apr10g1061 577 SMART rav1_2 354 418 IPR001471 GO:0003700|GO:0006355
Apr10g1061 577 SMART rav1_2 255 324 IPR001471 GO:0003700|GO:0006355
Apr10g1061 577 ProSiteProfiles AP2/ERF domain profile. 255 318 IPR001471 GO:0003700|GO:0006355
Apr10g1061 577 CDD AP2 254 320 IPR001471 GO:0003700|GO:0006355
Apr10g1061 577 Pfam AP2 domain 353 404 IPR001471 GO:0003700|GO:0006355
Apr10g1061 577 Pfam AP2 domain 255 310 IPR001471 GO:0003700|GO:0006355
Apr10g1061 577 SUPERFAMILY DNA-binding domain 254 320 IPR016177 GO:0003677
Apr10g1061 577 MobiDBLite consensus disorder prediction 484 520 - -
Apr10g1061 577 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 4 479 - -
Apr10g1061 577 MobiDBLite consensus disorder prediction 484 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1061 Apr-Chr10 23004482 23007872 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1061 1 441 AP2-EREBP Transcription Factor Family AT1G72570 49.383 1.06e-133 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Apr10g1061 AP2 1.2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1061 K09285 - gmx:100809762 967.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1061 10 23004482 23007872 Apr10g1061 10 23004482 23007872 ECH