Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1059 ATGGGAAGAAGCCCTTGTTGCTCTAAGGAAGGCTTGAACAAAGGAGCATGGACAGCTTTGGAAGACAAAATTCTAACAGAATACATAAACATTCATGGCGAAGGAAAATGGAGACACCTACCCAAAAGAGCAGGTCTTAAGAGATGCGGGAAAAGTTGCAGGCTAAGATGGTTGAATTATCTAAGACCTGGCATTAAAAGAGGCAACATTACTAATGACGAAGAGGAGCTTATAGTCAGGCTTCACAACCTTCTTGGAAACAGGTGGTCCTTGATTGCTGGAAGGCTTCCAGGACGAACAGACAATGAAATCAAGAACTATTGGAATACAAATATTGGAAGGAAGCTTCAGAATGGTACTCCAAGCAGCTCCATTACAAGTGGTAATGGTGCAAGAAGCTCTATAAACACACTTCAACGAGATCGAAGCCTTAAGAACCAAGAGTGGCACGATCCACCAGATAAGGGTTCGTGCCTTGTTCAGACTAAAGCAACGAGGTGGACTAAGATACTGATGGTTGACAATGGTAACCCTAGCTCATTTGACAACAAAGACTATTTATCTCCAAAATCATCCAATGATGATACCACCTACTTCCCTTTGGGTGATTCATTTTATGATACAGATTTTGATTTTCTTCCGGTGACAACTTTCATGGACTCCGGGATTGATTGGAACTGA 681 0.42 MGRSPCCSKEGLNKGAWTALEDKILTEYINIHGEGKWRHLPKRAGLKRCGKSCRLRWLNYLRPGIKRGNITNDEEELIVRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTNIGRKLQNGTPSSSITSGNGARSSINTLQRDRSLKNQEWHDPPDKGSCLVQTKATRWTKILMVDNGNPSSFDNKDYLSPKSSNDDTTYFPLGDSFYDTDFDFLPVTTFMDSGIDWN* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1059 226 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Apr10g1059 226 SMART sant 13 63 IPR001005 -
Apr10g1059 226 SMART sant 66 114 IPR001005 -
Apr10g1059 226 CDD SANT 16 61 IPR001005 -
Apr10g1059 226 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Apr10g1059 226 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr10g1059 226 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Apr10g1059 226 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 176 - -
Apr10g1059 226 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr10g1059 226 Gene3D - 14 66 - -
Apr10g1059 226 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Apr10g1059 226 CDD SANT 71 112 IPR001005 -
Apr10g1059 226 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Apr10g1059 226 Gene3D - 70 145 - -
Apr10g1059 226 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1059 Apr-Chr10 22993184 22994693 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1059 1 116 MYB Transcription Factor Family AT2G16720 75.000 3.01e-61 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr10g1059 Myb_DNA-binding 1.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1059 K09422 - gmx:100809225 299.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2473 9 32070151 32071644 Apr10g1059 10 22993184 22994693 ECH
Apr10g1059 10 22993184 22994693 Apr10g1059 10 22993184 22994693 ECH