Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1058 ATGGGTAGACGTCCCTGCTGTCCCAAAGAGATCAACAAAGGTGCTTGGTCTCGAGAAGAAGATGAAACCCTCTCCAAATATGTTGCCATCCATGGAGAAGGCAAATGGCAAAAGGTTGCCCAAAATGCAGGTTTAAAGCGATGTGGAAAAAGTTGCAGACAAAGATGGTTGAATTATCTCAAGCCCGGTATAAAAAGAGGCGACATCTCCGTAGATGAAGAGGACATGATTATAAGACTTCATCGTCTTCTTGGTAACAGATGGGCATTGATAGCGAAGAGGCTACCGGGACGAACAGACAATGAAATCAAGAACTATTGGAATACTAATTTGTCAAAGAAGTTGCAGAAACAGCCTACATCGACATCTGCTTCTTCAATTCAACACAAATATGAAGAAGAGAAGACCATAAAAATGCATGTAGCACTCGAAGCTCCACGGCCTAGGAAAGTGAAGTCCATTCAAAATAGTAAAATTTTGGAGACTGGGGGATGTGATAGGCATAGTACTACTCCAAGCCCTTCCAATAAATTAGAGGGTAGTAGTGATGAAACTTCTTTTACTGATTTCCTCATTGACATTGATCAGAACCAGTTGTTGATTGGTGATGAATCCAACTCAAAGCTCCCAGAAATTGAAAAAGACCACAATAACAAGGTAGGCTTAAACAATAGTCCTAGCTTATTATCACCTTCTGATCATTGTCAAAATCTCTTACAAGAGAAATTTGACCCTTTGGAGACCCTTTTGGATGTGGAGCTTAAGAGAATGGCTTCTTTTCTTGGACTGGAAAATGATTGA 801 0.4045 MGRRPCCPKEINKGAWSREEDETLSKYVAIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYLKPGIKRGDISVDEEDMIIRLHRLLGNRWALIAKRLPGRTDNEIKNYWNTNLSKKLQKQPTSTSASSIQHKYEEEKTIKMHVALEAPRPRKVKSIQNSKILETGGCDRHSTTPSPSNKLEGSSDETSFTDFLIDIDQNQLLIGDESNSKLPEIEKDHNNKVGLNNSPSLLSPSDHCQNLLQEKFDPLETLLDVELKRMASFLGLEND* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1058 266 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Apr10g1058 266 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Apr10g1058 266 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Apr10g1058 266 Gene3D - 70 142 - -
Apr10g1058 266 MobiDBLite consensus disorder prediction 155 183 - -
Apr10g1058 266 PANTHER MYB TRANSCRIPTION FACTOR 1 259 - -
Apr10g1058 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Apr10g1058 266 CDD SANT 15 60 IPR001005 -
Apr10g1058 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 64 IPR017930 -
Apr10g1058 266 MobiDBLite consensus disorder prediction 153 183 - -
Apr10g1058 266 Gene3D - 10 66 - -
Apr10g1058 266 SMART sant 12 62 IPR001005 -
Apr10g1058 266 SMART sant 65 113 IPR001005 -
Apr10g1058 266 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Apr10g1058 266 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 259 - -
Apr10g1058 266 CDD SANT 70 111 IPR001005 -
Apr10g1058 266 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1058 Apr-Chr10 22983907 22985238 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1058 1 115 MYB Transcription Factor Family AT2G16720 64.655 9.07e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr10g1058 Myb_DNA-binding 6.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1058 K09422 - gmx:547568 429.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1058 10 22983907 22985238 Apr10g1058 10 22983907 22985238 ECH