Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1046 ATGAAGAACTTATCTAAGAAAGATTCTGGTTCTGCCCATTTAACATCTTATGCTCTTGGATGCTCATCATGGGGCACTTCCTCTGAATCTAATGTGCAACAATCGTCCATGTCCAAAAATTTGACCTTGAAAATGAGTGTTCTTCCACATCAATGCCATAAGACTAAGCCAATGAATTTTCAATTTCAAGACCAAGATTCATCTTCAACTCAATCAACTGGTCAATCTTATCCGGAAGTGGGTTCGGCACAATCAGGTCAAATTTCTGTCCAGTATAGCAATTCTTCTGCTTGTTCAACACTTAACAAAACTGGGGAAAAGAGCGTGGCAGGTCTCATCAGGTCATCTGTGGGGAGTCAGGATTTTACCTTCCCTCCTTCGCAACTGGGTCACAACCAATCATTTGTTCATACTGCATTCCATCATGGGGAGCCTTGCTTTAGTGGCCTACTAGCTACTCCATATAGGCCAGAACCTAATCTAATAGGAATGACTCCTATGCGAATTCCTCTGCCACTTGCTCTCAGTGACGAACCCATATATGTGAATGCAAAGCAGTACCATGCTATCCTGAGACGCAGGCAGTATCGTGCAAAGCTGGAAGTGCAGAACAAACTCATCAAAGAACGGAAAGTAAGTGCACTTTTTTTTTTTCCACTCCCCTCTAAAGTCATTTCTCTTAACAACTCTGACATTTGTTTGCAGCCATATCTTCATGAGTCCCGCCACCTACACGCACTGAAGAGAGCAAGAGGTTCTGGTGGACGCTTTCTGAATACCAAAAATCTCCAAGAGTCAAAGCTCGTTTCTGGCCGAGACGTTTCTGGCTGTACTCAATTGAATCTGTGTGGAAAAATTTCAGAATCGAAGGTGCATGCAGTGGAAAACTACAGAGATGGTGCTTCCACAACCACTTGTTCTGATGTTACTAGTGCATCTAATAGTGATGACTTGTTCCGGCAACATGAGTCAGACTTTAGATTATGTGGTTACCCTTCTAACATTGGGAGGAACATACAGGGTTTCTCAGCTGATTTTGGTGGTGGTAATAAACATCATCTACCAGTCCTAATGTGA 1077 0.428 MKNLSKKDSGSAHLTSYALGCSSWGTSSESNVQQSSMSKNLTLKMSVLPHQCHKTKPMNFQFQDQDSSSTQSTGQSYPEVGSAQSGQISVQYSNSSACSTLNKTGEKSVAGLIRSSVGSQDFTFPPSQLGHNQSFVHTAFHHGEPCFSGLLATPYRPEPNLIGMTPMRIPLPLALSDEPIYVNAKQYHAILRRRQYRAKLEVQNKLIKERKVSALFFFPLPSKVISLNNSDICLQPYLHESRHLHALKRARGSGGRFLNTKNLQESKLVSGRDVSGCTQLNLCGKISESKVHAVENYRDGASTTTCSDVTSASNSDDLFRQHESDFRLCGYPSNIGRNIQGFSADFGGGNKHHLPVLM* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1046 358 SMART cbf3 175 260 IPR001289 GO:0003700|GO:0006355
Apr10g1046 358 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 19 211 - -
Apr10g1046 358 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 235 327 - -
Apr10g1046 358 Gene3D - 176 262 - -
Apr10g1046 358 ProSiteProfiles NF-YA/HAP2 family profile. 176 260 IPR001289 GO:0003700|GO:0006355
Apr10g1046 358 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 178 257 IPR001289 GO:0003700|GO:0006355
Apr10g1046 358 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 19 211 IPR001289 GO:0003700|GO:0006355
Apr10g1046 358 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 235 327 IPR001289 GO:0003700|GO:0006355
Apr10g1046 358 MobiDBLite consensus disorder prediction 62 82 - -
Apr10g1046 358 ProSitePatterns NF-YA/HAP2 subunit signature. 181 201 IPR018362 GO:0003677|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1046 Apr-Chr10 22834404 22837097 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1046 9 356 CCAAT-HAP2 Transcription Factor Family AT1G17590 39.833 2.57e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Apr10g1046 CBFB_NFYA 1.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1046 K08064 - gmx:100500765 493.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1046 10 22834404 22837097 Apr10g1046 10 22834404 22837097 ECH