Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1045 ATGGACTCGCGCGCACAGTATAATCCTCGTACCGTCGAAGAGGTTTTTAGGGATTTCAAGGGTCGACGAGCTGGTCTCATCAAAGCCCTTACCATCGATGTTGAAGATTTCTACAACCAATGTGATCCTGAGAAGGAGAATTTGTGCTTGTATGGCTTCCCCAGTGAGCAGTGGGAAGTAAATTTACCTGCTGAAGAAGTACCGCCGGAGCTTCCTGAGCCTGTGCTGGGCATTAACTTTGCTAGGGATGGGATGCAAGAAAAAGACTGGTTATCTTTAGTTGCTGTTCATAGTGATGCATGGTTACTTGCTATTGCATTCTATTTTGGAGCCAGATTTGGGTTTGATAAAGCTGACAGGAAACGACTTTTCAATATGATCAATGAACTGCCAACAGTATTTGAAGTTGTTACTGGTTCAGCAAAGAAACAAACTAAGGAGAAGTCTTCTGTTTCAAATCACAGTGGTAGCAAGTCTAAGTCCAGCTCTAAGCGGGCTCCAGAATCTCTGACTAGGCAGGCAAAGCCTCTGCAGTCAAAAGATGAGGATGAGGAACTGGATGAGCCAGACGATGATGAACATGGCGAGACCTTGTGTGGTGCATGTGGTGAGCATTATGGCACTGATGAATTCTGGATATGCTGTGACATTTGTGAGAAGTGGTTCCATGGTAAATGTGTGAAGATCACCCCTGCTAGGGCAGAGCATATCAAGCAATACAAGTGCCCATCATGCAGTAACAAGAGAGCTCGCCCCTGA 759 0.4559 MDSRAQYNPRTVEEVFRDFKGRRAGLIKALTIDVEDFYNQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIAFYFGARFGFDKADRKRLFNMINELPTVFEVVTGSAKKQTKEKSSVSNHSGSKSKSSSKRAPESLTRQAKPLQSKDEDEELDEPDDDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1045 252 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Apr10g1045 252 CDD PHD_AL_plant 198 248 IPR044104 -
Apr10g1045 252 PANTHER CPG BINDING PROTEIN 6 252 IPR045104 GO:0006355|GO:0042393
Apr10g1045 252 MobiDBLite consensus disorder prediction 145 174 - -
Apr10g1045 252 SMART PHD_3 198 246 IPR001965 -
Apr10g1045 252 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 6 252 - -
Apr10g1045 252 SUPERFAMILY FYVE/PHD zinc finger 188 249 IPR011011 -
Apr10g1045 252 ProSiteProfiles Zinc finger PHD-type profile. 196 248 IPR019787 -
Apr10g1045 252 Pfam PHD-finger 199 248 IPR019787 -
Apr10g1045 252 ProSitePatterns Zinc finger PHD-type signature. 199 245 IPR019786 -
Apr10g1045 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 247 IPR013083 -
Apr10g1045 252 MobiDBLite consensus disorder prediction 145 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1045 Apr-Chr10 22828526 22832792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1045 5 251 Alfin-like Transcription Factor Family AT3G42790 74.899 1.04e-122 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Apr10g1045 Alfin 1.2e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1045 - - gmx:100170700 456.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2405 2 28685221 28690535 Apr10g1045 10 22828526 22832792 ECH
Apr9g2485 9 32144766 32148953 Apr10g1045 10 22828526 22832792 ECH
Apr10g1045 10 22828526 22832792 Apr10g1045 10 22828526 22832792 ECH