Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1043 ATGAACATGAGTGTGGCCGAGGAAGAACCTGATGAAGAGGTTCATGTCCCGGCCGAGATTGATTGGCACATGCTTGATAAATCAAAGTTTTTCTTCCTTGGTGCTGCACTTTTCTCTGGGGTTTCTGCAACCCTTTACCCTGTTGTTGTGTTGAAAACTAGGCAACAAGTGGCTCAGTCTCAAGTTTCTAGCATTAAGACTGCATTTTCATTGATTAGGGGTGAGGGTTTTAGAGCTTTGTATCGTGGGTTTGGTACTTCTTTGATGGGTACAATCCCTGCTAGAGCTCTATATATGGCTGCATTAGAGGTTACAAAGAGCAATGTGGGCACGGCTACTGTGCGGTTTGGTCTTGCAGAACCTACTGCTGCTGCAGTTGCTAACGCAGCTGCTGGCTTGAGTGCAGCCATGGCAGCTCAGCTTGTGTGGACCCCAGTTGATGTTGTGAGTCAAAGATTGATGGTTCAAGATTGTTCTGATTCCGGTAATCCTAAGGCGGTGGCTTCTCGGTATGTTAATGGGATTGATGCCTTCAGGAAAATTCTAAGCACTGATGGTCCTAAAGGCTTGTATAGGGGTTTTGGGATATCAATTTTGACCTATGCACCTTCAAATGCAGTTTGGTGGGCTTCATATTCTGTTGCACAGAGAATGGTTTGGGGTGGAGTTGGGTACTACTTGTGCAAGAAAGGTGAGGAGGGGAGTGACAGTGCAACTAATAATGCATTGAAGCCTGATACCAAGACTGTGATGGCAGTTCAGGGAGTCAGTGCAGCAATGGCAGGTGGCATGGCTGCTTTGATAACCATGCCGTTGGATACCATCAAGACAAGACTGCAGGTCTTGGACAGCGATGAGAACGGCCGCCGTGGACCGACAGTTATGCAGACAGTGAGGAGTCTGGTTAAGGAAGGTGGTTGGATGGCTTGTTATAGAGGATTGGGACCTAGATGGGCTTCAATGTCAATGTCTGCAACAACAATGATCACAACTTATGAGTTTCTCAAACGGCTTTCCGCCAAGAATCAAGAGGTTTTGACATGA 1044 0.4684 MNMSVAEEEPDEEVHVPAEIDWHMLDKSKFFFLGAALFSGVSATLYPVVVLKTRQQVAQSQVSSIKTAFSLIRGEGFRALYRGFGTSLMGTIPARALYMAALEVTKSNVGTATVRFGLAEPTAAAVANAAAGLSAAMAAQLVWTPVDVVSQRLMVQDCSDSGNPKAVASRYVNGIDAFRKILSTDGPKGLYRGFGISILTYAPSNAVWWASYSVAQRMVWGGVGYYLCKKGEEGSDSATNNALKPDTKTVMAVQGVSAAMAGGMAALITMPLDTIKTRLQVLDSDENGRRGPTVMQTVRSLVKEGGWMACYRGLGPRWASMSMSATTMITTYEFLKRLSAKNQEVLT* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1043 347 Pfam Mitochondrial carrier protein 125 219 IPR018108 -
Apr10g1043 347 Pfam Mitochondrial carrier protein 253 342 IPR018108 -
Apr10g1043 347 Pfam Mitochondrial carrier protein 37 108 IPR018108 -
Apr10g1043 347 PRINTS Mitochondrial carrier protein signature 31 44 IPR002067 GO:0055085
Apr10g1043 347 PRINTS Mitochondrial carrier protein signature 83 103 IPR002067 GO:0055085
Apr10g1043 347 PRINTS Mitochondrial carrier protein signature 191 209 IPR002067 GO:0055085
Apr10g1043 347 PRINTS Mitochondrial carrier protein signature 258 280 IPR002067 GO:0055085
Apr10g1043 347 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER-LIKE PROTEIN 2 344 - -
Apr10g1043 347 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 218 IPR018108 -
Apr10g1043 347 ProSiteProfiles Solute carrier (Solcar) repeat profile. 249 338 IPR018108 -
Apr10g1043 347 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 108 IPR018108 -
Apr10g1043 347 Gene3D Mitochondrial carrier domain 29 345 IPR023395 -
Apr10g1043 347 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 2 344 - -
Apr10g1043 347 SUPERFAMILY Mitochondrial carrier 24 335 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1043 Apr-Chr10 22819415 22821975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1043 1 344 Chloroplast and Mitochondria Gene Families AT1G72820 75.216 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1043 K15121 - gmx:100784616 560.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1043 10 22819415 22821975 Apr10g1043 10 22819415 22821975 ECH