Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1026 ATGGGGAATCAGAAGCAGAAGTGGACTCAGGACGAAGAAGACGCGCTTATCGCGGGAGTTGAAAAGCACGGGCCTGGAAAGTGGAAGAACATTCTCAAAGATCCTCAATTCGCCCCCTTCCTCACTTCTCGTTCCAACATCGACCTCAAGGATAAATGGCGAAATTTGAGCGTCAGCAATGGTTCTCAAGGCTCTAAGGACAAAACTAGGGTTCCCAAACTCAAAGCTTCACCTGCTACTCCTGCCACCGCCACTCTTCAGAACGTTGCTCCTGCTCCTCAAAACGCACCGTCTGACGTTGCTGTCGCTGACCCTTCTCAAACTGAGCAAGATGTCAAAAACCCTCCAAGGTATAATGCTATGGTTTTTGAAGCTCTAACAACACTGAAAGATAGTAATGGATCCGACCTAAATGCCATTGTTAGTTTCATCGAGCAAAAGCATCAGGTTCCTCAAAATTTCAGAAGGGCATTAAGTACAAGGTTGAGGAGGCTTGTTAGTCAAGGGAAACTTGAAAAGGTACAAAATTGTTACAAGATAAAAAAGGAGACCTCCGAGGGGACAAAATCACCTGTACCAAAACAAAAGGATGTCCGGCCACCACAGCGGCAATCACCAGCCTCTGGCTTTATCTCATCTAATGAGACAATAAGGGAAGCTGCTGATGCTGCAGCTTATAGAGTTGCTGATGCTGAAAGCAAATCGTATCTGGCTGCTGAAGCTATAAAGGAGGCAGAAAGAATAGCATGGTTGGCTGAAGATAATGATTCTATGTTACAGCTAGCGAAGGAGATTTATGAACAATGTTCGCGCGGTGAAATTTTCCTCTTGGCTTAA 837 0.454 MGNQKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGSQGSKDKTRVPKLKASPATPATATLQNVAPAPQNAPSDVAVADPSQTEQDVKNPPRYNAMVFEALTTLKDSNGSDLNAIVSFIEQKHQVPQNFRRALSTRLRRLVSQGKLEKVQNCYKIKKETSEGTKSPVPKQKDVRPPQRQSPASGFISSNETIREAADAAAYRVADAESKSYLAAEAIKEAERIAWLAEDNDSMLQLAKEIYEQCSRGEIFLLA* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1026 278 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 114 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr10g1026 278 MobiDBLite consensus disorder prediction 56 116 - -
Apr10g1026 278 Gene3D - 111 197 IPR036388 -
Apr10g1026 278 CDD H15 116 174 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr10g1026 278 SUPERFAMILY "Winged helix" DNA-binding domain 114 194 IPR036390 -
Apr10g1026 278 MobiDBLite consensus disorder prediction 182 213 - -
Apr10g1026 278 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Apr10g1026 278 MobiDBLite consensus disorder prediction 80 114 - -
Apr10g1026 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 62 IPR017930 -
Apr10g1026 278 Pfam linker histone H1 and H5 family 116 175 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr10g1026 278 SMART h15plus2 112 177 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr10g1026 278 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 1 277 - -
Apr10g1026 278 SMART sant 4 59 IPR001005 -
Apr10g1026 278 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Apr10g1026 278 Gene3D - 2 58 - -
Apr10g1026 278 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Apr10g1026 278 CDD SANT_TRF 6 56 - -
Apr10g1026 278 PANTHER SINGLE MYB HISTONE 4 1 277 IPR044597 GO:0003691
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1026 Apr-Chr10 22643411 22656114 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1026 1 278 Single Myb Histone (SMH) Gene Family AT1G72740 49.823 2.97e-84 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Apr10g1026 Linker_histone 5.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1026 K09422 - gmx:778177 431.795