Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1022 ATGGAAGCTCGAGTTGGGAACAAGTTCCGTCTCGGTCGGAAGATTGGTAGCGGATCTTTCGGAGAGATCTATCTCGGAACTAATATTCAGACTAATGAAGAGGTTGCGATTAAGCTTGAAAGTATCAAAACCAAGCACCCTCAATTGTTGTATGAATCAAAGCTGTATAAAATACTGCAAGGAGGAAATGGGATCCCAAATGTGAAATGGTATGGTGTTGAAGGAGAATACAATGTCCTCGTGATGGATTTACTTGGTCCTAGTCTTGAGGATTTATTCAATTTCTGTAGTCGGAAATTATCTCTCAAAACTGTTCTCATGCTTGCTGATCAGATGATAAATCGAGTTGAATTTGTTCATTCGAAATCATTTTTACATCGGGACATCAAGCCAGACAACTTTCTCATGGGTTTAGGGAGGCGTGCAAATCAAGTGTATATCATTGACTTTGGTCTTGCTAAGAAATACAGAGACACCACTACACATCAGCATATTCCTTACCGAGAGAATAAGAATTTGACTGGAACTGCTAGGTATGCCAGTATGAATACTCATCTTGGAATTGAGCAAAGCCGGAGGGATGATTTGGAGTCACTTGGATATGTTCTTATGTATTTCTTAAGAGGAAGTCTGCCTTGGCAGGGATTGAAAGCAGGTACTAAGAAGCAGAAGTATGAAAAGATCAGTGAGAAGAAAGTTTCTACTTCTATTGAGTCTCTCTGTCGTGGCTATCCTTCAGAATTTGCATCATACTTCCATTACTGCCGATCACTGAGGTTTGACGATAAACCAGATTATGCATATTTGAAAAGACTTTTACGTGACCTTTTCATTCGTGAAGGATTCCAGTTTGATTATGTCTTTGATTGGACTATTTTGAAATATCAGCAATCTCAAATTTCCACTCCTGCTGCCCGTGCTATTGTAAGTGGAGATGATGGTAGGCATAATAATTGGTCTTCATCAGATCCTACTCGTAGGAGAAACTCTGGACCTATTGCTAATGATGGAGTGTTATCTAGGCAAAAAGCCCCTGTTACAAACGACGCAACTGGATCTAAAGATGTTATGCTGTCAGGTTCTCATTTCTTCCGGTCCAGTGGATCTGCCAGGCAAGGTGCTGTCTCAGGCAGCCGGGATGTAGTTATTGGCGGTGAGTCTGAGTCCTCTCGTCCTCTGACCCTGGATTCAAGTCAGGCAGCACTTCGTAAAACCTCTGGTCCTCAGAGAAGTTCAGCTATCCTATCATCTGAACACAACCGAGCACCCTCTGGCAGAAACACATCAAACATAAAGAATTTGGACTCAACTCTTAGAGGTATGGAGAGCCTGCATTTCAACGACGAGAGGGTACAATATTAG 1362 0.4185 MEARVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLESIKTKHPQLLYESKLYKILQGGNGIPNVKWYGVEGEYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTTTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLLRDLFIREGFQFDYVFDWTILKYQQSQISTPAARAIVSGDDGRHNNWSSSDPTRRRNSGPIANDGVLSRQKAPVTNDATGSKDVMLSGSHFFRSSGSARQGAVSGSRDVVIGGESESSRPLTLDSSQAALRKTSGPQRSSAILSSEHNRAPSGRNTSNIKNLDSTLRGMESLHFNDERVQY* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1022 453 Gene3D Transferase(Phosphotransferase) domain 1 1 331 - -
Apr10g1022 453 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Apr10g1022 453 MobiDBLite consensus disorder prediction 367 433 - -
Apr10g1022 453 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1022 453 MobiDBLite consensus disorder prediction 390 433 - -
Apr10g1022 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Apr10g1022 453 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1022 453 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1022 453 PANTHER CASEIN KINASE 1-LIKE PROTEIN 2 1 437 IPR030509 GO:0004672|GO:0005524
Apr10g1022 453 MobiDBLite consensus disorder prediction 309 353 - -
Apr10g1022 453 MobiDBLite consensus disorder prediction 314 329 - -
Apr10g1022 453 PANTHER CASEIN KINASE-RELATED 1 437 - -
Apr10g1022 453 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Apr10g1022 453 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1022 Apr-Chr10 22624933 22630042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1022 7 214 CBL-interacting serine-threonine protein kinases AT5G58380 28.511 6.69e-13 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Apr10g1022 Pkinase 5.5e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1022 K02218 - gmx:100787808 803.127