Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1019 ATGGCCACTGGTAGTGTTTGTTCCTCTTCCTTTGCTTCATTTTCTCCCAGAAAAAAGTATGATGTTTTTATAAGCTTTAGAGGTGAGGACACTCGCCATAACTTGCTTAGCCACCTTATCACTGCTTTGTGTGAAAAATCAATAAAAACCTACGTAGACTACAAACTTGAAAGAGGTGATGAGATATCACAAGCACTCACCCAAGCCATTGAGGACTCCAATATGTCTTTGATTCTCTTTTCACAAAACTATGCTTCCTCAACATGGTGCTTGCATGAACTCACTAAGATACTTGAATGCAAGAGGAAGCAAGGACACATTGTTCTACCTGTGTTCTATAAAGTTGATCCATCACATGTTCGCAACTCCAAAGAGAAGGTGCAAAAGTGGAATGCTGCTCTCACTGAAGCTGCCAATTTAGCTGGCTGGGACTCTAGGAGCTTCAGGGACGAATCTAAACTTATCAAAGAGATTGTCAACGATGTTTTGCGAAAATTATATCATAAGTATTCAAGTGATCAGTTAAGAGGCCTCGTTGGAGTAGATGAAAATTGCAAATCAATCGAATCACTACTGGAAAAGGTCCCAATAATTGGAATTTGGGGCATGGGCGGTATTGGTAAGACAACTGTTGCCAAGGTTGTATTTGCCAAACTATGCTCTCAATATGAAAGTTACTGCTTCTTGGAAAATGTAAGAGAACAATCACAGAAACATGGGTTAAATTATTTACATGATAAGCTTATCTTTGAGCTGCTGAAGGATGAGCATCACCATAATACCACAGCCGAAGTTGTAGGATCCAAATTTATTATGAGAAGGCTTGAAAGTAAAAAAGTTTTGGTTGTGCTTGATGATGTCAATGGTTTTGAACAATTAGAATATCTAGCAAGAGAATTTATTTGCTTGGGATCAGCTAGTAGAGTTATTATAACAAGAAGAAATAAGCATTTGCTTATTGGAAGAGTTAATGAAATACATGTAGTCAAGGAATTGAATTTTCAAGATTCCCTTAAGCTTTTCAGCTTAAATGCATTCAAAGACAGCAATCCTCAAATGGAATATAAAGAGCTATCAGAAAGGGCAGTTATGTATACTAAGGGAAATCCATTAGCTTTGAAAGTGTTGGGTTCTCTTTTTCATTCTAAAAGTATAGAAATATGGGAAAGTGCACTTAGCAAACTCAGGAAATATCCAAACGTACAAATTCAAAATGTGTTAAGATTGAGTTATGATGAATTAGATGATGCAGAAAAGGACATATTTCTAGACATTGCATTCTTTTTTGAAGGAGAAGATAAAGATCATGTCATAAGGCTATTAGACGCCTGTTATTTGTTTGCCACTAGTGGAATAGAAACCCTCCAAGATAAAGCTCTCGTAACTATTTCAAAAGACAACAAAATACAAATGCATGAGCTGATTCAAGAAATGGGCTGGGAAATAGTTCGTCAAGAATCTATTAAAGACCCAGGAAGGCGTAGCCGATTGAGAGACACTGAAGAAGTTTGTGAAGTATTGAAAAATAACAGGGGAACTGATGTAGTTGAAGGCATAATGTTAGACGTGTCTCAAATTAGGGAACTGCCCTTGAATGCTGACATATTCAAAAAGATGGTTAATCTAAGATTGCTCAAGTTCTATTCTCCCTTCAATAAGAGATCATGTAATGTGCACCTTCCCACGGGTCTTGAGTCACTGCCCCATAAATTAAGATACCTTCATTGGAATGGATATCCTTTAATGTCCCTGCCATCAACTTTTTGTGCGGAAATGCTTGTTCAGCTTTGCATGCCACATAGCCATGTAAAAAAACTTTGGGATGGATCACAGGATTTTGTCAACTTAAAGGAAATAGACCTTATTTTCTCCACGCAGTTGATGGAGCTCCCAGATTTATCCAAGGCAACAAAGCTTGAAATACTAAATATCTCCCACTGCATAAATTTGAGTCATGTTCATCCATCTATTTTATCACTCGATACCCTTGTTGATTTTGTTCTATATGGTTGCCAAAAACTCAAGTCTCTTCATTTAAGATCTGTCAAGTACATTGTTCTAAATGGATGCTTCAATCTGAAGGAGTTTTCATTGACCTCAGGAGAAATAAACGTGTTGGACTTAAGAGGGACAGCAATAGAAACATTAGACATGTCCATTGGGCGTCTCAGCAAAATTGAAAAGATCTACGTCTGCCAATCACTCAAAAATGTTCCAAAGGAGTTACCTTCTTTTACATGTCTTAGGGAACTGAATCTTCATAACTGTAGACACCTTGATACGACAAATTTGCATAACCTACTTGATGCTTCACGAAATGTACAAAAGTTGATTTTGGATGAGTGTTGTAACTTGCATGAACTCCCTTACAATATTAAACATCTTTCATGCCTTGAACATCTGTCACTCAGGAATTGCATGAGCCTTAAATATATACCACAGATTCCACCATCTGTTGGACAGTTAGATGCTGTGAATTGCACATCCTTGGAGATAGTGTTGGCCTCTGTGATTTCAAGACAACAGGGGCAAAAGGGCATAAGCATTTCATTTGAGAATTGTTTGAAATTGGATGAACATTCAAGGTCTAGTATTATGGAACATGCATATTTCACAATGAAGCAAGTTGTGCATGCAAATGTCAATGTTCCACCCTATCTGAATAAAAGTAGTGGTGATGTTTGTTTGCCAGGAACCAAGGTGCCGGAGTGGTTTGAAAACAAGACAACAACACAAGCTTCCATAACTGTTGAACTTCCTTCACCCTTCCTCTTATTGGGTTTTGTTTTTTGTGTGGTTCTTTCTCAGTTTCGGTCAAATGCCAAGTTTGAGTATCATCAGATAGTATGTCAATGGTGTTTGGAAGATGGTAGAAGAATTGGATGCACACGTAGGTGGTATTACAAAGCTATCACAGCATTGAATTCAGATCATGTTTATCTATGGTATGAACCATCTTGTGACAAGATAATTGAGGCAGTTAAAGAAAGCCAAGCCAATGATGATGAGTGCATCACCCTCAACCTGAATGTGTCATTTGAATTCTATGTTGAAACTCATAATCTTTGTGAGCCCAAACATATTGGTTTGATTGGCATAAAAAAATGTGGTGTCTGTCCGATATATGCCTCAGAACATTACAGTTTCATAAACCACATAGAATTGGACATGAAGTTAGAACATAGAGATAGAGAGATTACAATGGGGGTTGGAAGCTTTGATGAGAAGAAAGATGAGACTGGAAGCAGTGGAGTAGAAATTCAGGAGCAGAATCAAGAAAAAGACTCCTGTTATTGCTTACCTGGGAAAATCAATGGCTATGCAACCAGTGGAGACCTTCGCCAAATCGGCGACCTCAGGATTCTTCCAGGGAGAGAAATTTTTTAA 3387 0.3782 MATGSVCSSSFASFSPRKKYDVFISFRGEDTRHNLLSHLITALCEKSIKTYVDYKLERGDEISQALTQAIEDSNMSLILFSQNYASSTWCLHELTKILECKRKQGHIVLPVFYKVDPSHVRNSKEKVQKWNAALTEAANLAGWDSRSFRDESKLIKEIVNDVLRKLYHKYSSDQLRGLVGVDENCKSIESLLEKVPIIGIWGMGGIGKTTVAKVVFAKLCSQYESYCFLENVREQSQKHGLNYLHDKLIFELLKDEHHHNTTAEVVGSKFIMRRLESKKVLVVLDDVNGFEQLEYLAREFICLGSASRVIITRRNKHLLIGRVNEIHVVKELNFQDSLKLFSLNAFKDSNPQMEYKELSERAVMYTKGNPLALKVLGSLFHSKSIEIWESALSKLRKYPNVQIQNVLRLSYDELDDAEKDIFLDIAFFFEGEDKDHVIRLLDACYLFATSGIETLQDKALVTISKDNKIQMHELIQEMGWEIVRQESIKDPGRRSRLRDTEEVCEVLKNNRGTDVVEGIMLDVSQIRELPLNADIFKKMVNLRLLKFYSPFNKRSCNVHLPTGLESLPHKLRYLHWNGYPLMSLPSTFCAEMLVQLCMPHSHVKKLWDGSQDFVNLKEIDLIFSTQLMELPDLSKATKLEILNISHCINLSHVHPSILSLDTLVDFVLYGCQKLKSLHLRSVKYIVLNGCFNLKEFSLTSGEINVLDLRGTAIETLDMSIGRLSKIEKIYVCQSLKNVPKELPSFTCLRELNLHNCRHLDTTNLHNLLDASRNVQKLILDECCNLHELPYNIKHLSCLEHLSLRNCMSLKYIPQIPPSVGQLDAVNCTSLEIVLASVISRQQGQKGISISFENCLKLDEHSRSSIMEHAYFTMKQVVHANVNVPPYLNKSSGDVCLPGTKVPEWFENKTTTQASITVELPSPFLLLGFVFCVVLSQFRSNAKFEYHQIVCQWCLEDGRRIGCTRRWYYKAITALNSDHVYLWYEPSCDKIIEAVKESQANDDECITLNLNVSFEFYVETHNLCEPKHIGLIGIKKCGVCPIYASEHYSFINHIELDMKLEHRDREITMGVGSFDEKKDETGSSGVEIQEQNQEKDSCYCLPGKINGYATSGDLRQIGDLRILPGREIF* 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1019 1128 Gene3D - 169 328 IPR027417 -
Apr10g1019 1128 Gene3D - 17 168 IPR035897 -
Apr10g1019 1128 SUPERFAMILY "Winged helix" DNA-binding domain 402 508 IPR036390 -
Apr10g1019 1128 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 1017 IPR044974 GO:0006952
Apr10g1019 1128 Pfam TIR domain 19 178 IPR000157 GO:0007165
Apr10g1019 1128 Gene3D Ribonuclease Inhibitor 507 705 IPR032675 -
Apr10g1019 1128 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 13 1017 - -
Apr10g1019 1128 Gene3D - 331 415 IPR042197 -
Apr10g1019 1128 Pfam C-JID domain 896 1045 IPR045344 -
Apr10g1019 1128 Gene3D Ribonuclease Inhibitor 713 834 IPR032675 -
Apr10g1019 1128 SUPERFAMILY L domain-like 519 836 - -
Apr10g1019 1128 Pfam NB-ARC domain 196 414 IPR002182 GO:0043531
Apr10g1019 1128 SUPERFAMILY Toll/Interleukin receptor TIR domain 13 143 IPR035897 -
Apr10g1019 1128 SMART till_3 19 165 IPR000157 GO:0007165
Apr10g1019 1128 ProSiteProfiles TIR domain profile. 18 166 IPR000157 GO:0007165
Apr10g1019 1128 PRINTS Disease resistance protein signature 197 212 - -
Apr10g1019 1128 PRINTS Disease resistance protein signature 274 288 - -
Apr10g1019 1128 PRINTS Disease resistance protein signature 366 380 - -
Apr10g1019 1128 PRINTS Disease resistance protein signature 793 809 - -
Apr10g1019 1128 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 425 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1019 Apr-Chr10 22597145 22604784 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1019 6 801 WRKY Transcription Factor Family AT4G12020 34.704 1.66e-115 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1019 - - aprc:113851031 2258.41