Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1016 ATGATGTGTTCCTCTGCAGGTGTTGGAGGATATCATAGAAGGTACGATGTATTCATTAGCTTCAGAGGAGAAGACACAAGGACCAACTTCATTAGCCATCTCCATAGTGCTCTCATAAACAAAAAGATTCGTGTTTACAGAGACTATGATATTAATAGAGGAGATGATGTTTGGCCTTCACTTGCGAAAGCGATATCGGACTCCCATATATCGCTTGTTGTTTTCTCACAAAACTATGCCTCTTCAAAATGGTGCTTGCAAGAACTGGTGAAGATAATGGAATGCAGAAGAGAACATGGACAAGTTGTTATACCAGTGTTCTACCAAATTGATCCATCACACGTGCGGAAGCAGACAGGGAGCTACGAGAAAGCATTCGCACAACACGATCAAGATCGATCCAACCAACTCACAGGGTGCTGTTGGAGAGATGCTCTCACTCAAGCTGCCAGTATTGCTGGATGGGACTCTCGAACCCAAAAGGACGATTCTGAAGTCATCCAAAACATTGTCAATGATGTTTTGCAGAAGCTATACCCGCAATACACTATTGAATTGAAAGGCATAGTTGGAATCGAGGAAACATGTAAACACCTTGAATCATTACTGAAAAAGGTTCGGGTAATTGGAATTTGGGGTATAGGTGGGGTAGGTAAGACAACTATTGCTAAAGCTTTATTTGCCAAACTCTTTCTCCAGTATGACAATGCTTGTTTCTTGGAAAATGTAAGAGAAGAATCAAAAAGGGTAGGACTAAAATCCTTACATGATAAGCTTGTTTCTGAGCTACTAAAGGGAGAAAATCCCGTATCTAGTGTTGTAGGATCCACTTTCTTGATGAGCATACTCAGTAGTAAACGAGTGTTCATTGTACTGGATGATGTAGATCATTTTGAGCAATTAGAATATTTGTGTGGAGAACATAGTGGTCTTGGAGAAGGTATCAGACTTATTATAACAACAAGAGATAAGCATTTACTTAGTGGAAGAGTTGATAAGATATATGAGATCAAGGAATGGAAGTACAAAGAATCTCTAGAGCTTTTGTGCTTAAATGCCTTCAAGCAAGGGCATCCTCAAATGGGATATGAAGGTCTCTCAGATAGGGCAGTGCATTATGCAGGGGGCATTCCGTTAGCTTTAAAAGTTTTGGGTTTGCATCTCTACTCTAGAAGCCGAGAATTTTGGGAATGTACATTGAGAAAACTCGAAAAGCATCCCAATGAGGATATTTTGAACGTGTTAAAAGTGAGTTATGATGGATTAGATGATCTAGAAAAGAAAATATTTCTAGACATCTCATTCTTTCTCAATATGAGAGGCAAAAATGAAGTCATAAAGATACTTGATGCTTCTGGTTTCTATGCAGCTAGTGGAATACAAGTCCTTGAAGATAAAGCTCTGATAACTGTTGGACTTGGCAATAGAATACTAATGCATGATTTGTTACAAGATATGGGTTTGGAAATAGTTCGTCAAGAATGTAAGGAAAACCCAGAAAGACGTAGCCGGTTGATGGGTAATGAAGCTTATGATGTGCTTAAAAATAAGAAGGGAACTGCTGCAGTTGAAGGAATAACATTAGATTGGTTTCCAATAGATTTTCAATTTAGAGCTAACACATTCAACGGGATGACTAAATTGAGATTTCTTCAATTATACACTCCCTCTAGTGAGAGATCCCATACTGTGCATCATCATACCGTTCTTGATGCAGTTTCTGATGAATTGAGGTACCTTGAGTGGATTGGATTTCCTTTTAAGTCTCTTCCACAAACTTTTTGTGCTAAGTTTCTTGTTGAGATCTACATGCCTCACAGCAACGTTGAAGAACTTTGGCATGGAGTGCAAGATCTTGTGAATTTAGAGTTAATTGATCTAAGTGAATGCAAACAGCTGATGAAGCTCCCGGATTTGTCTAGAGCTTCAAAACTTACAACGGTGTATCTCTCCGGTTGTGAAAGTTTGTGCGTTGTTCATTCATCCCTTTTATCTTTGGAAACACTTGTTCATTTGAGGCTGAACAGGTGCAAAAAACTCAAGAGTCTTAAAGTTGAAAAACATTTGGGAATTCTGCAGGATCTCTATGTCAATGGTTGTTCGAGCCTCACAGAATTTTCAGTGTCATCTGAGCTAATGAAATGGTTGGATTTAAGCCAGACAGGAATCAAAATATTGCACTCATCAATCGGTCGTCTAAGCAATCTATTGTCACTAAATCTTGAAGGTTTAAGACTTGAGAATCTTCCGAACGAGTTATCTTGCTTGACTTCTCTTAAGAGGCTTAAGATTTCTAAGAACGGACTAGTAATTAACAAAGAGAAGCTACATGTCCTGTGTGATGGCTTGGTATCTTTAAGAAGACTACAATTGAAGGATTGTTATGCGTTATCTGAACTTCCTGATAACATCATCAACTTATCATTGTTACGAGTACTAATTCTCGATGGAAGCAGCATTGAGAGGTTGCCTTCAAACATCAAACATCTTCTAGAACTACGGATTCTGTCCTTAGAGAATTGTAGGAAGCTTCAGTTTCTACCTGAGCTTCCATCATCCATCCTACAGCTTCATGTCAACAACTGTACCTCATTGGCTATGGTATCCAATTTAAGGACATTTTCAACAGATAAGGAAGATAAGCAGTGGAGCATTTCCTTCAAGAATGGAACAAAATTGAATGAATATTCACTCATCTGCATTATGGAAGACATCCATTTCACAATGGCAATGGCTGCATTTAACAATGAATTACAAAGAAGGTTTGGTAACAATCCTGAGGATTATTTTTACAGTAGTGTTGATGTTTGTTTACCAGGAAGTAATGTCCCAAGGATGTTCACTTATCGATCCACAGAGTCTTCACTTGCCATTGAACTTCCTGGTTATGACAAACGTTCCAACTTAATAGGCTTGTTTTACTCTATGGTTCTTTCTCCATCCGATAACATGGTGCTGCAGCATGGAGCTAAAGTCCAAGGTCAATGCTATCAGGCAAATGGTACAGCTGTTGGATACCCAGTTACATGGTCTCTCAAAGCCATTAGTAAATTGAATTCAGATCATGTTTTTGTACGTGGAGAATGTGATGATCTGATCAGTGTCAAAGAGTGTGGACTCCACCTACTGTGTTGTTCAGACTCACAGTTTCACAGTTTATTATCAGAATTAGACACAGAGCAAAACCAACTTGGGAACAGAATGAATGGCAGACTGTTAGATGCATTGAAGTTGTAA 3237 0.3877 MMCSSAGVGGYHRRYDVFISFRGEDTRTNFISHLHSALINKKIRVYRDYDINRGDDVWPSLAKAISDSHISLVVFSQNYASSKWCLQELVKIMECRREHGQVVIPVFYQIDPSHVRKQTGSYEKAFAQHDQDRSNQLTGCCWRDALTQAASIAGWDSRTQKDDSEVIQNIVNDVLQKLYPQYTIELKGIVGIEETCKHLESLLKKVRVIGIWGIGGVGKTTIAKALFAKLFLQYDNACFLENVREESKRVGLKSLHDKLVSELLKGENPVSSVVGSTFLMSILSSKRVFIVLDDVDHFEQLEYLCGEHSGLGEGIRLIITTRDKHLLSGRVDKIYEIKEWKYKESLELLCLNAFKQGHPQMGYEGLSDRAVHYAGGIPLALKVLGLHLYSRSREFWECTLRKLEKHPNEDILNVLKVSYDGLDDLEKKIFLDISFFLNMRGKNEVIKILDASGFYAASGIQVLEDKALITVGLGNRILMHDLLQDMGLEIVRQECKENPERRSRLMGNEAYDVLKNKKGTAAVEGITLDWFPIDFQFRANTFNGMTKLRFLQLYTPSSERSHTVHHHTVLDAVSDELRYLEWIGFPFKSLPQTFCAKFLVEIYMPHSNVEELWHGVQDLVNLELIDLSECKQLMKLPDLSRASKLTTVYLSGCESLCVVHSSLLSLETLVHLRLNRCKKLKSLKVEKHLGILQDLYVNGCSSLTEFSVSSELMKWLDLSQTGIKILHSSIGRLSNLLSLNLEGLRLENLPNELSCLTSLKRLKISKNGLVINKEKLHVLCDGLVSLRRLQLKDCYALSELPDNIINLSLLRVLILDGSSIERLPSNIKHLLELRILSLENCRKLQFLPELPSSILQLHVNNCTSLAMVSNLRTFSTDKEDKQWSISFKNGTKLNEYSLICIMEDIHFTMAMAAFNNELQRRFGNNPEDYFYSSVDVCLPGSNVPRMFTYRSTESSLAIELPGYDKRSNLIGLFYSMVLSPSDNMVLQHGAKVQGQCYQANGTAVGYPVTWSLKAISKLNSDHVFVRGECDDLISVKECGLHLLCCSDSQFHSLLSELDTEQNQLGNRMNGRLLDALKL* 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1016 1078 Pfam TIR domain 15 183 IPR000157 GO:0007165
Apr10g1016 1078 PRINTS Disease resistance protein signature 208 223 - -
Apr10g1016 1078 PRINTS Disease resistance protein signature 282 296 - -
Apr10g1016 1078 PRINTS Disease resistance protein signature 374 388 - -
Apr10g1016 1078 PRINTS Disease resistance protein signature 617 633 - -
Apr10g1016 1078 ProSiteProfiles TIR domain profile. 13 178 IPR000157 GO:0007165
Apr10g1016 1078 SMART till_3 14 152 IPR000157 GO:0007165
Apr10g1016 1078 Pfam NB-ARC domain 205 413 IPR002182 GO:0043531
Apr10g1016 1078 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 11 1017 - -
Apr10g1016 1078 Gene3D Ribonuclease Inhibitor 714 898 IPR032675 -
Apr10g1016 1078 SUPERFAMILY L domain-like 479 865 - -
Apr10g1016 1078 Pfam C-JID domain 938 1047 IPR045344 -
Apr10g1016 1078 Gene3D - 12 178 IPR035897 -
Apr10g1016 1078 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 155 IPR035897 -
Apr10g1016 1078 Gene3D - 341 423 IPR042197 -
Apr10g1016 1078 Gene3D - 179 336 IPR027417 -
Apr10g1016 1078 Gene3D Ribonuclease Inhibitor 534 713 IPR032675 -
Apr10g1016 1078 Pfam Leucine Rich Repeat 598 617 IPR011713 -
Apr10g1016 1078 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 433 IPR027417 -
Apr10g1016 1078 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 1017 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1016 Apr-Chr10 22572751 22577480 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1016 13 843 WRKY Transcription Factor Family AT4G12020 32.273 2.49e-99 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1016 - - lja:Lj3g3v2666470.1 1016.53