Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1011 ATGGGTGGTTCAGGAAGATGGCTTAAGTCGCTTATTTCTCTCAGAAAGCCATCCGCAAATGATCAAGAGAAGGGTGGTGATAAGAGTAAGAGAAAGTGGAAGTTATGGAGGAGTTCTTCAGAAGGCTATGGGATTGGATCCTCAATGAAGAAGGGACAGGGTGGTAGTGGTGGTTTTGACAAGTCTTCTTTTGTGGTGGCTGATGAAGCATTTGCTGCTGCAGTGGCTGCTGTGGTAAGAACTCCACTCAAAGACTTCGTGGTGATCAAGCAGGAATGGGCTGCTATTCGCATCCAGGCTGTGTTTCGAGGCTTCTTGGCAAGACGAGCTTTGAGGGCCCTGAGGGCAGTGGTGAGGCTGCAAGCTATATTTCGTGGTCGGCAAGTGAGGAAGCAAGCAGCAGTTACTCTAAGGTGCATGCAAGCTCTCGTGAGAGTTCAAGCACGTGTCAAGGCTAGGAATGTGAGGAAGTCTCCAGAAGGGAAAGCTGTGGAGAAACTATTGAATGATCATGCTGATCCTGCTAAGCAGGCTGAGCAAGGATGGTGTGACATTCCGGGAACAGTGGAAGAAGTCAAAGCAAAATTACAAATGAGGCAGGAAGGAGCAATCAAGAGGGATAGAACAATGCAATACTCTATCTCCAAGCAGAAATCAACAATGAGTGCTAGTCCAAACTCAAGAGGTGCTAAGTCAGTGACTGGATGGAGCATGTTAGAACGCTGGATGGCATCTAAGCCATGGGAAAACAGGTTGATGGAAGAGATGTATTTGGACTCACCTGACATGACTATAGTGACCAGTAAAAGTGATGATCTTGTCGTTCCCTTTAGTTCAAATCAACAAAATGGCTCAGTCAAAGCAAGAAGGAATGGTGTGACAACCAGGATTTCAACTAAATCTCTTACAACCAGTCAATCAACTCCATCATCTTCAGCCATAAGCTCTGAATGCATGTATGATGATAGTCCCGTGTCAACTTCATGCACATCAGGATCACCTACTCTACCATCTACCAACAATGTTATGGTGGAAGCAACTGAGGAAAGAAATGTTGGTAAACCAAGCTACATGAATCTGACAGCATCAACCAAAGCTAAACTGAAAGCCTGTAGGTTTTCTTCTCAGAATTCAAAGAGAATCTTTATGGATGATTGTGTGTCACTAAGTGGAGTTACTAGAAGCAGTTCTGGCTCCTATCCTTCAGCTAATATATGGAAGGATCTATATGCAACACCTCTAAGGGCAAGTTATCAAAAACGATATACATTTGAAGATAAGTAG 1284 0.4431 MGGSGRWLKSLISLRKPSANDQEKGGDKSKRKWKLWRSSSEGYGIGSSMKKGQGGSGGFDKSSFVVADEAFAAAVAAVVRTPLKDFVVIKQEWAAIRIQAVFRGFLARRALRALRAVVRLQAIFRGRQVRKQAAVTLRCMQALVRVQARVKARNVRKSPEGKAVEKLLNDHADPAKQAEQGWCDIPGTVEEVKAKLQMRQEGAIKRDRTMQYSISKQKSTMSASPNSRGAKSVTGWSMLERWMASKPWENRLMEEMYLDSPDMTIVTSKSDDLVVPFSSNQQNGSVKARRNGVTTRISTKSLTTSQSTPSSSAISSECMYDDSPVSTSCTSGSPTLPSTNNVMVEATEERNVGKPSYMNLTASTKAKLKACRFSSQNSKRIFMDDCVSLSGVTRSSSGSYPSANIWKDLYATPLRASYQKRYTFEDK* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1011 427 Pfam IQ calmodulin-binding motif 115 132 IPR000048 GO:0005515
Apr10g1011 427 Pfam IQ calmodulin-binding motif 93 112 IPR000048 GO:0005515
Apr10g1011 427 ProSiteProfiles IQ motif profile. 115 142 IPR000048 GO:0005515
Apr10g1011 427 Gene3D - 89 163 - -
Apr10g1011 427 ProSiteProfiles IQ motif profile. 91 119 IPR000048 GO:0005515
Apr10g1011 427 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 425 - -
Apr10g1011 427 SMART iq_5 90 112 IPR000048 GO:0005515
Apr10g1011 427 SMART iq_5 113 134 IPR000048 GO:0005515
Apr10g1011 427 PANTHER IQ-DOMAIN 5-RELATED 1 425 - -
Apr10g1011 427 MobiDBLite consensus disorder prediction 20 34 - -
Apr10g1011 427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 78 133 IPR027417 -
Apr10g1011 427 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1011 Apr-Chr10 22547515 22549847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1011 1 410 IQD Protein Family AT1G72670 47.552 3.74e-103 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1011 - - gmx:100784093 580.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2418 2 28785095 28787016 Apr10g1011 10 22547515 22549847 PCT