Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1010 ATGGGACATCACTCTTGCTGCAACAAGCAGAAGGTCAAAAGAGGACTATGGTCACCTGAAGAAGATGAAAAGCTCATCAACTACATCACAACTTATGGACATGGTTGTTGGAGTTCTGTCCCTAAGCTTGCAGGCCTGCAGAGATGTGGAAAGAGTTGTAGATTAAGATGGATAAATTATCTAAGACCTGATTTAAAACGTGGAAGTTTCTCTCCTCAAGAAGCAGCCCTGATTATCGAACTTCATAGCATTTTAGGCAACAGGTGGGCGCAGATAGCTAAGCACCTACCTGGAAGAACAGATAATGAGGTGAAAAACTTTTGGAATTCAAGCATAAAGAAGAAACTCCTCTCTCATGATGCTGTTCCTCCTTTAGCCACATTTTCTGATATTCACAGCCCCTACAATATTGCTTCTATGGAAAGTTTCTTCCCTTTAACTGCAAACCCTAATATGATCCTAAACTTTCATCATCACCCTGCAGACCAACTCTATCTTCCCTCCCCATCTCCAATCCTACAAGGTTTTGATCACAATAATGATATTAAGTTAGACATTAACAATTATAATGCCAATTTCCTTCACATTCAGAATCCAATACCAGAAACATTACCACCACTTTCCAATCCTTCCTCTTATGATGATACATGGTCATTGGGTTGTGTAGCTCTACATCTTAATCCAAATCAAGAAAATCAAATTTCTAAAAGTGATAGCACCCCACATTATGTTGTTGACAAATTCATCAACCCAACTGCATTGCAGCAATATGAATGTCACTTAGTAGAAACCATTGCGCCAAAAGTGAGTGAGAGCATTGAGGATTATGTTTGTAGCATCCCATACTCATCTACCTCCCAGGATCAACATGAGGCTTCAGCAAAATTTCAAAGTAATCAACAAGATCTAACTGTGGTAGCAAATCAATTGGAGTACATCGATGCCCTCATGTCATCGTTGCCATCTTCAACAACCTCGTCATCAGTATCAAGCAGTCAAATAGTGACAAACCCTATTATTCCTTCAGGATGGGAGACTTGA 1041 0.3977 MGHHSCCNKQKVKRGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLLSHDAVPPLATFSDIHSPYNIASMESFFPLTANPNMILNFHHHPADQLYLPSPSPILQGFDHNNDIKLDINNYNANFLHIQNPIPETLPPLSNPSSYDDTWSLGCVALHLNPNQENQISKSDSTPHYVVDKFINPTALQQYECHLVETIAPKVSESIEDYVCSIPYSSTSQDQHEASAKFQSNQQDLTVVANQLEYIDALMSSLPSSTTSSSVSSSQIVTNPIIPSGWET* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1010 346 CDD SANT 17 61 IPR001005 -
Apr10g1010 346 SMART sant 66 114 IPR001005 -
Apr10g1010 346 SMART sant 13 63 IPR001005 -
Apr10g1010 346 Gene3D - 69 116 - -
Apr10g1010 346 Gene3D - 11 67 - -
Apr10g1010 346 PANTHER MYB DOMAIN PROTEIN 55 2 340 - -
Apr10g1010 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Apr10g1010 346 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr10g1010 346 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Apr10g1010 346 CDD SANT 69 109 IPR001005 -
Apr10g1010 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Apr10g1010 346 PANTHER TRANSCRIPTION FACTOR MYB26 2 340 - -
Apr10g1010 346 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Apr10g1010 346 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr10g1010 346 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1010 Apr-Chr10 22538499 22539825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1010 1 118 MYB Transcription Factor Family AT3G13890 96.610 7.25e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr10g1010 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1010 K09422 - gmx:100785147 569.311