Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1002 ATGAAGATGAAGGGTTTGATGTTCCAGCAACAAGTAGTGGAGGAGAACATGTCAAATTTGACTTCTGCATCTGGTGAAGCTAGTGCTTCTTCTGGCAACAGAACTGAAATTGGAACCAGTTACCCTCAACAATACTTGGTTCAACCACAAACTCAGACTCCACCAGCAAAGAAAAAGAGAAACCTTCCTGGCAACCCAGACCCTGATGCTGAGGTTATAGCCTTGTCCCCCAAGAGTCTTCTGGCCACCAACAGGTTCATTTGTGAGATCTGTAACAAAGGATTTCAAAGGGATCAGAATCTTCAACTTCATAGAAGAGGGCATAATTTGCCATGGAAGTTGAAGCAGAGAACAAGCAAAGAGGTGAGGAAGAAGGTTTATGTGTGTCCAGAACCCAGTTGTGTGCATCATGACCCATCAAGGGCCCTGGGGGACCTAACTGGAATCAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGATAAGTGCTCTAAGAAATATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAAACCTGTGGCACAAGGGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACCCACAGAGCTTTCTGTGATGCATTAGCAGAGGAGAGTGCAAGAGCCATCACAGGCACAACCTCACAACCTTCATCCTCTCATCACCATCACATGAATCTCCAAACACAATTCAACCCTCAAGATCTGCATGGCTTCCCATTGAAAATAGAACAACAACAACAAAGTTTCAATCTTAGGCCAGAAATAGTACCTCCTTGGCTTGGCCCACCCACTGTTGATCTCTCCTCATCCTCATCAATCTTCTCCACAAACCAAGAATTTTCACACCAGGAAAACCCTAACCCTAGCCTTGGTCCCACTCTTGCTACCTACCGAGCAGTCCCTAACCCTTCCCCACACATGTCAGCCACAGCATTGTTGCAGAAAGCAGCTCAGATGGGTGCAACCATGAGCAGAACTGGTTCCTCACCAGCAATGATAAGGCCCCACATGCAGACTCACGTGTCTTCTTCTGCTGATTCTGGTAACATTTCCAGTGGTAATTTTGGTTTGAACTTGTCCTCACGTGAAGACACCAGTACTTCAACAACAGCAACAACTACAACTTCTGCAACTACAGTGTTTGGCCATGGCTTATCACCTTTGGGGAATAAAGCTGCTGTGTCTTCTGCTCCAACCCTTCTTCATGATGTTATCAACTCTTTCTCTAACCCTTCTGCTTTTGAAGGAACCCCTTTTGAGGATCCATTTGGTGGCATTCTCAACTCAAAGAAAGATGATAACTTGCATTTGCATGACACCTTTTCTAAAACAAACACCACCACCCATCTTGCTACTGCTGCTGGTGGAAATGAAGGGTTGACCAGGGATTTCTTGGGTCTTAGGCCTCTCTCTCACACTGATATTCTCAGCATTGCTGGCATTGGAAACTGCATCAATGATCAACAAAACCAATCTCAAAAGCAGTGGCAAGGTTAG 1533 0.4547 MKMKGLMFQQQVVEENMSNLTSASGEASASSGNRTEIGTSYPQQYLVQPQTQTPPAKKKRNLPGNPDPDAEVIALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAITGTTSQPSSSHHHHMNLQTQFNPQDLHGFPLKIEQQQQSFNLRPEIVPPWLGPPTVDLSSSSSIFSTNQEFSHQENPNPSLGPTLATYRAVPNPSPHMSATALLQKAAQMGATMSRTGSSPAMIRPHMQTHVSSSADSGNISSGNFGLNLSSREDTSTSTTATTTTSATTVFGHGLSPLGNKAAVSSAPTLLHDVINSFSNPSAFEGTPFEDPFGGILNSKKDDNLHLHDTFSKTNTTTHLATAAGGNEGLTRDFLGLRPLSHTDILSIAGIGNCINDQQNQSQKQWQG* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1002 510 MobiDBLite consensus disorder prediction 19 58 - -
Apr10g1002 510 MobiDBLite consensus disorder prediction 19 70 - -
Apr10g1002 510 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Apr10g1002 510 SUPERFAMILY beta-beta-alpha zinc fingers 85 182 IPR036236 -
Apr10g1002 510 SMART c2h2final6 127 157 IPR013087 -
Apr10g1002 510 SMART c2h2final6 162 182 IPR013087 -
Apr10g1002 510 SMART c2h2final6 86 108 IPR013087 -
Apr10g1002 510 Pfam Zinc-finger double-stranded RNA-binding 86 108 IPR022755 -
Apr10g1002 510 Gene3D Classic Zinc Finger 140 220 - -
Apr10g1002 510 Gene3D Classic Zinc Finger 67 133 - -
Apr10g1002 510 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 108 IPR013087 -
Apr10g1002 510 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 19 495 - -
Apr10g1002 510 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1002 Apr-Chr10 22476536 22479585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1002 13 338 IDZ Gene Family AT1G55110 62.865 1.79e-133 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr10g1002 zf-C2H2_jaz 7.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1002 K25870 - gmx:100808344 714.146