Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0999 ATGAACAACAACAACAACACAACAAGAAACGGTAACAGCACCACTCAAGCTTGTGCTGCATGCAAACACCAACGTAGAAAGTGTGCACCTGATTGCATTCTTGCACCTTATTTTCCTCACGATCGCCAACCCCAATTCCTTAATGCCCATAAATTATTTGGTGTCAGCAACATCGTCAAAATCATCAAATTCCTTGATCCCCACGATAAGGACCAAGCCATGCGCACCATCATTTACCAATCTGATATGAGAGCCAACGATCCTGTTGGTGGTTGCTATAGGTACATTCAAGATCTTCAAGCCCAGATTGAATACTATAGGGCTGAACTTGAACTTGTTCTTCAACAACTCGCTATTTTTAGAGCCCAGGCTCATCACCAACAACAACATGGTATGTATGCTCCAACAACAAACAATGTTAATGTCTCTGTCAATGGAGATGGTGAAGTTATAAATGGTGATCCATTGAGCTTGTATAACCAGCCACCTGTTGTTTCTAGTAAGCCTCATTATCAGTATCTGCCACAACAGGAGCAGTATGTTATGATGCATGAAATTGATAATAGTAGCCAAAACAGCAACGCCAACCTTTTGCAGGAGCATATTAATACATGGGCCATGCAGAATTCCATGTCCCTTTCATCTTTGTCATTGCAAGGCCAGAGTAGTAATGTTAGTGATGAGTATGATCACAAGCCAGTGCTTGATTTGCATTCTGATGAAAGGAGTGAATTAGGATTCGACTCTGAAGAATTAGTCCATCGCAGTGATGAAGCAGTCTTGTTTAAGATAGATGACGCAGTAATAAAAGCTGAGGCTGATTGCATCCAACAAGCTCAAGACCATGATCTGAAAGGTGCTGCAACTTTGTTTACTCTCACAAATTGAACTAGCTGA 897 0.4136 MNNNNNTTRNGNSTTQACAACKHQRRKCAPDCILAPYFPHDRQPQFLNAHKLFGVSNIVKIIKFLDPHDKDQAMRTIIYQSDMRANDPVGGCYRYIQDLQAQIEYYRAELELVLQQLAIFRAQAHHQQQHGMYAPTTNNVNVSVNGDGEVINGDPLSLYNQPPVVSSKPHYQYLPQQEQYVMMHEIDNSSQNSNANLLQEHINTWAMQNSMSLSSLSLQGQSSNVSDEYDHKPVLDLHSDERSELGFDSEELVHRSDEAVLFKIDDAVIKAEADCIQQAQDHDLKGAATLFTLTN*TS* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0999 297 Pfam Lateral organ boundaries (LOB) domain 17 112 IPR004883 -
Apr10g0999 297 Coils Coil 96 116 - -
Apr10g0999 297 ProSiteProfiles LOB domain profile. 16 117 IPR004883 -
Apr10g0999 297 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 238 - -
Apr10g0999 297 PANTHER LOB DOMAIN-CONTAINING PROTEIN 22 11 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0999 Apr-Chr10 22458049 22459276 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0999 16 245 AS2 family AT3G13850 50.215 1.37e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Apr10g0999 LOB 4.5e-36 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0999 10 22458049 22459276 Apr10g0999 10 22458049 22459276 ECH