LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr10g0990	ATGAGCCGCTACGACAGCCGCTCCGGCGACCCCACTTCGTACCGTGACCGGAGGAGTGATTCTGGGCTAGGTGCACCTACAGGGTCTGGTGGTTCGGTACAGCATTCTTCATCAGACAGGAGGGATTATGATGATGGTGGGTCACCGAGGAACCTCAATTTGGATGGTTTACCTCATTTTGAGAAAAACTTCTACACTGAGTCACCGGCAGTAAGGGCAATGACAGAGGTTGAGGTTAATGAGTACCGGCAGCAGAGGGAAATAACTGTTGAAGGTCGAGATGTCCCCAAACCTGTTAAGACCTTTCACGATGCCAGTTTTCCAGAATATGTAATGCAAGAAATTACAAAAGCTGGCTTTTCTGAACCTACACCCATTCAGTCTCAAGGTTGGCCAATGGCTTTGAAGGGGCGTGATCTGATAGGAATTGCAGAAACAGGATCAGGGAAGACTCTTGCTTACTTGTTGCCTGCCATTGTGCATGTCAATGCTCAGCCAATTCTAGATCCTGGAGATGGACCAATTGTGTTAGTTTTGGCTCCGACTCGTGAACTTGCTGTCCAAATACAACAAGAGGCGACTAAATTTGGTGCATCATCAAGGATTAAGAGTACATGCATATATGGTGGGGTTCCAAAAGGACCTCAGGTGCGTGATCTCCAGAAAGGTGTTGAAATTGTAATTGCCACTCCGGGAAGGTTAATTGATATGCTTGAGTCAAATCATACTAACTTGCGGAGGGTCACATACCTTGTACTGGATGAAGCTGATAGGATGTTGGATATGGGGTTTGATCCTCAAATACGGAAAATTGTCTCTCAGATTCGTCCGGATCGTCAAACATTGTACTGGAGTGCTACCTGGCCAAAGGAGGTTGAACAGTTGGCAAGGAAGTTCCTTTATAACCCATACAAAGTAATTATAGGCTCACCAGATTTAAAAGCTAACCATGCAATACGGCAATATGTTGACATTGTTTCGGAAAAGCAGAAATATGATAAATTGGTGAAGTTGCTAGAGGACATCATGGATGGCAGCCGAATACTGATATTCATGGATACCAAGAAAGGATGTGATCAGATTACTAGGCAGCTCCGCATGGATGGCTGGCCTGCACTTTCAATTCATGGAGATAAAAGTCAAGCAGAAAGAGATTGGGTGCTCTCAGAATTTAAATCTGGAAAAAGTCCTATTATGACTGCAACAGATGTTGCAGCCCGTGGTTTAGATGTGAAGGATGTGAAGTATGTGATAAATTATGACTTCCCAGGATCACTGGAGGACTATGTTCATCGCATTGGGCGGACTGGGAGAGCTGGTGCAAAAGGAACTGCATACACATTCTTCACAGCTGCTAATGCCAGATTTGCAAAGGAACTTATAACCATACTTCATGAAGCTGGACAGAAAGTGAGTCCTGAATTAGCAGCAATGGGGCGTGGTGCACCACCTCTGCCGTCAGGTTCCCGAGGTTTCCAAGACCGTGGGAGGGGTTATGGCGGTTCTCGTCCTTGGAGCTGA	1521	0.4589	MSRYDSRSGDPTSYRDRRSDSGLGAPTGSGGSVQHSSSDRRDYDDGGSPRNLNLDGLPHFEKNFYTESPAVRAMTEVEVNEYRQQREITVEGRDVPKPVKTFHDASFPEYVMQEITKAGFSEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYNPYKVIIGSPDLKANHAIRQYVDIVSEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILHEAGQKVSPELAAMGRGAPPLPSGSRGFQDRGRGYGGSRPWS*	507

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr10g0990	506	MobiDBLite	consensus disorder prediction	1	57	-	-
	Apr10g0990	506	PANTHER	LD32873P	53	491	-	-
	Apr10g0990	506	CDD	SF2_C_DEAD	319	449	-	-
	Apr10g0990	506	MobiDBLite	consensus disorder prediction	479	506	-	-
	Apr10g0990	506	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	252	260	IPR000629	-
	Apr10g0990	506	Gene3D	-	63	309	IPR027417	-
	Apr10g0990	506	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	334	479	IPR001650	-
	Apr10g0990	506	Pfam	Helicase conserved C-terminal domain	331	440	IPR001650	-
	Apr10g0990	506	Gene3D	-	310	480	IPR027417	-
	Apr10g0990	506	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	100	128	IPR014014	GO:0003724
	Apr10g0990	506	CDD	DEADc_DDX5_DDX17	111	306	-	-
	Apr10g0990	506	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	172	456	IPR027417	-
	Apr10g0990	506	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	131	306	IPR014001	-
	Apr10g0990	506	Pfam	DEAD/DEAH box helicase	124	295	IPR011545	GO:0003676\|GO:0005524
	Apr10g0990	506	MobiDBLite	consensus disorder prediction	1	17	-	-
	Apr10g0990	506	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	53	491	-	-
	Apr10g0990	506	SMART	helicmild6	359	440	IPR001650	-
	Apr10g0990	506	SMART	ultradead3	119	322	IPR014001	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr10g0990	Apr-Chr10	22361469	22366654	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr10g0990	87	460	Eukaryotic Initiation Factors Gene Family	AT3G19760	34.133	3.81e-77	246

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr10g0990	K12823		-	gmx:100790464	964.526