Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0979 ATGGCATGCTTGGGAAGTACAATAGATAACTTCTCATGGATTTGCATTGGAGATTTCAATTTGGCTTCCATTTCTACCAAAAGGTGTATGATAGACATTGTAAACATGCTTTTTCTGAGTGTCTTCTATGTATCTTTGCTTATCCATTTGATCAAGAAAAGCCCTGCAAGTGGTTGCTATAGAAAGGGATGTGTTCATGTAGTTACCGCAGTTTGTTGTACCCTTTTGAGCATTGCATATTTTATTGATGGTTTGTGGGATCTCATAGCCAAAATCAGTGGCTTCAATCAGCTGAACTCATCGGTTTGCATTGTCAGAGGACTAGTTTGGATTTCTTTAGCAGTTTCTTTGTTTGTTCAGAGGTCCCAATGGATAAAAAATTTATGCTCCATTTGGTGGGTGTCTTCATGTACATTGGTTTCAGCACTTAATGTTGAAATTCTGCTTAAAGAGCATACCTTTCAAGTTTTTGGTATGGTAATATGGCTAGTACTCATTCTAACTGTTCTCTGTGCCTTCCAAAACCATGGCTACTTTGTCCCACTGAAAACTTCAGATACCAGTTTGTGTGAGCCTCTAGTAGTTCATGAGGTCAAACTTAAACAAACAGGACTAGGCCATGCCACCATTCTTAGCAGATTGACTTTCTCTTGGATGAATGCTTTACTCAGTTTGGGTTACTCAAAGCCTCTAGCACTTGAAGACATACCTTCTTTGGATTCTGAAGATAAAGCTGATTTTTCATACCAAAAGTTTGCTCATGCATGGGATTCCCTTTTGTGGGAGAGGGGCATGAAAAATTCTAGAAACTTGGTTTTGATGTCCATAGCCCGGGTTTACTTGAAAGAAAACATCTTTATAGCCCTTTGTGCTTTTCTTAGGACAATTTGTGCAGTTGTGTCACCTTTACTTGTCTATGCTTTTGTAAACTATTCCAGTAGCATTGAGGAAGACCTTAAACAAGGAATGGCCATACTAGGGTGTCTTATATTTGCCAAGGTAGTTGAGTTAGGAATGAAAATAAGATCTGCTTTAATGGCTGCAGTATATAAAAAGCAATTGAAACTTTCAGTTCTGGGTAAGAGAAGGCATTCAACTGGAGAGATTGTGAATTACATTGCAGTTGATGCCTATAGAATGGGAGAGTTTCCATGGTGGTTTCATACATTGTTGTTTTCTGCATTGCAACTTTTTCTGGCTCTTGGTGTCCTTTTTGGTGTTGTTGGTCTAGGTGCACTTCCTGGTTTAGTGCCTTTTCTCATTTGTGGATTTCTAAATGTACCATTTGCCAAGATCCTTCAAAAATATAGATCAGAATTTATGATTGCACAGGATGAGCGCCTAAGGTCAACTTCAGAGATTCTGAGTAGTATGAAAATCATAAAGTTGCAATCCTGGGAGGATAACTTCAAGAAGTTAGTTGAATCCCTTCGTGCTAAAGAGTTCGAATGTTTGGCTAAAACACAGTTCACGAGAGCTTATGGTACATTTATTTATTGGATGTCCCCTACCATCATTTCATCTGTTATTTTCATGGGATGTGTGCTTTTTCAGAGTGCCCCTTTGAATGCTGGAACTATCTTCACAGTTCTTGCAGCATTGAGAAGCATGGGAGAACCTGTTAATTTGATTCCAGAAGCACTTTCCGTTCTGATTCAAGCTAAGGTCTCCTTTGATCGTCTCAACACCTTTTTGCTTGATGATGAGATAAAAAGTGATGATGATATTGGAAGAAATTCAAAACTAGAGTCATGTAACAATAGTGTTGAAATTATAGCAGGCAACTTCAGTTGGGATCAGGAATCAATGCCTCCAACTTTGAGAGATGTGAATTTTGAGATCAAGTGGGGGCAGACTCTAGCAGTTTGTGGTCCAGTTGGTGCAGGAAAAACATCTCTCCTATATGCGATACTTGGAGAGATACCCAAAATTTCAGGAACTGTTAGTGCAGGTGGAACTCTTGCCTATGTTTCCCAAACTCCGTGGATTCAAAGCGGTACAATTCGCGATAATATTCTCTATGGAAAACCAATGGATGAAACCAGGTACAAGTATATCATTAAGGTCTGTGCCTTGGATAAGGATATTGATGGATTTAGCCATGGTGATCTTACAGAAATAGGTCAGAGAGGGATTAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCAAGAGCTGTCTATAATGATGCTGATATCTATCTCCTAGATGACCCTTTTAGTGCTGTAGATGCTCATACTGCGTCTATTTTGTTCAATGATTGTGTCAGGTCTGCTTTAAGAAGGAAAACTGTTATTGTTGTGACTCATCAAGTTGAATTTCTCTCCAAAGTTGACAAAATTTTGGTAATGGAAGGGGGGGAAATTACTCAAATAGGTGGTTATGAAGATTTGTTGACAGCAAGAACAGCCTTTGAACAACTTTTGAGTGCTCATAGAGAGGCAATCACAGGGTTGGAAATAAGTAATGAGAACAAAAGAGAATTTGAAAATGTGGATACAATTCAGCCTGAGGATTCTCATGTTTTTAATCTCACTAAAGGTGGAAGTGATGGAGATATTTCTTCCAAAGGTCAACTTACACAAGAAGAAGAAAAGGAGATTGGTGATGTAGGGTGGAAGCCATTTGGTGATTATATTTTCTTCCCCAAAGGATCATTGCTTCTGTGTTTGAGCACATTATCACAGTTGGCTTTTGTTGGTTTTCAGACTGCATCAACTTATTGGCTTGCTCTAGCCATTGAAATCCCAGAAGTAACTAGTAGCATCCTAATCGGAGTTTATGCTGTGACTTCTTTTTTAAGCATTGTCTTCGTATATCTGAGGTCTTTCTTTGGTGCACAACTTGGTTTAAAAGCCTCTAAAGCATTCTTCTCTGCCTTCACTGATGCTATCTTCAATGCTCCTATGTTGTTCTTTGACTCGACCCCTGTAGGGAGGATTTTGACGCGAGCTTCATCAGATTTGAGTATTTTGGATTTTGATATCCCTTTTACCACTATCTTTGTAGCAGCTGAAATAGCTGAACTTCTGACAATGATTGGGATAATGGTTTCAGTCACATGGCAAGTGCTCATTGTTGCATTTCTTGCGATGGTGGCTTCAAAATATATTCAGGGCTATTATCAAGCCTCTGCAAGAGAAATTATACGGATCAATGGAACCACAAAAGCTCCTCTTATGAATTTTACAGCTGAGACATCACTTGGTGTAATTACTATACGAGCATTCAACATGACTGACAGATTTTTCAAAAACTACCTAAAGCTTGTTGACACAGATGCCACAATGTTCTTTCATTCTAATGCTGCCATTGAATGGTTAGTTTTAAGGATAGAAGTGCTTCAGAATTTGACACTCTTCACTGCTGCTTTGCTACTTGTTCTACTTCCAAAGGGATATGTGGCTCCTGGCCTTGTGGGACTTTCTCTGTCTTATGCTTTTTCACTGACAGCAACTCAAGTTTATCTGACTCGAATGTTTTGCAATTTATCAAACTATGTGATCTCTGTTGAACGAATCAAGCAATTCATTCACATACCAGCAGAGCCTAGTGCAATTGTAGAGGACAATAGACCACCATCTTCTTGGCCTTACAAAGGTAGAATAGATCTCCAATCTCTAGAGATTAGATATCATCCAAACGCTCCATTAGTCCTTAAGGGCATCTCCTGTACATTTAAAGAAGGGAGTAGAGTAGGTGTTGTAGGAAGGACTGGAAGTGGAAAAACTACACTTATAAGTGCTTTGTTTCGCTTAGTTGAGCCTACAAGAGGTGACATTCTTATAGATGGGATCAATACATGCTCAATAGGGGTAAAAGATTTGAGAATGAAGCTAAGCATTATTCCTCAAGAACCAACTCTTTTCAAGGGTAGCATTCGAACCAACTTGGACCCTCTAGGCCTGTACTCTGATGATGAAATATGGAAGGCTTTAGAAAAATGTCAGCTTAAGGCAACAATTAGCGGTCTACCAAATCTCTTGGACACTTCTGTGAGTGATGAAGGTGAAAACTGGAGTGTAGGGCAGCGCCAACTCTTATGTCTAGGAAGAGTACTCCTTAAGAGGAACAGAATACTTGTTCTGGATGAAGCTACTGCTTCCATTGATTCTGCAACAGATTCTATTCTACAACGAGTTATCAGACAAGAATTTTCTCGATGCACAGTTATAACTGTGGCTCACAGAATTCCAAGTGTAATAGACAGTGACATGATCATGGTCCTATCTTATGGGAAACTGGTGGAGTATGACAAGCCTTCAAAGCTTATGGATATTGACTCTTCATTCTCTAAGCTGGTAGCAGAATATTGGTCCAACTGTAACAGGAATTTGCTCCCAAAAGATTAG 4356 0.3926 MACLGSTIDNFSWICIGDFNLASISTKRCMIDIVNMLFLSVFYVSLLIHLIKKSPASGCYRKGCVHVVTAVCCTLLSIAYFIDGLWDLIAKISGFNQLNSSVCIVRGLVWISLAVSLFVQRSQWIKNLCSIWWVSSCTLVSALNVEILLKEHTFQVFGMVIWLVLILTVLCAFQNHGYFVPLKTSDTSLCEPLVVHEVKLKQTGLGHATILSRLTFSWMNALLSLGYSKPLALEDIPSLDSEDKADFSYQKFAHAWDSLLWERGMKNSRNLVLMSIARVYLKENIFIALCAFLRTICAVVSPLLVYAFVNYSSSIEEDLKQGMAILGCLIFAKVVELGMKIRSALMAAVYKKQLKLSVLGKRRHSTGEIVNYIAVDAYRMGEFPWWFHTLLFSALQLFLALGVLFGVVGLGALPGLVPFLICGFLNVPFAKILQKYRSEFMIAQDERLRSTSEILSSMKIIKLQSWEDNFKKLVESLRAKEFECLAKTQFTRAYGTFIYWMSPTIISSVIFMGCVLFQSAPLNAGTIFTVLAALRSMGEPVNLIPEALSVLIQAKVSFDRLNTFLLDDEIKSDDDIGRNSKLESCNNSVEIIAGNFSWDQESMPPTLRDVNFEIKWGQTLAVCGPVGAGKTSLLYAILGEIPKISGTVSAGGTLAYVSQTPWIQSGTIRDNILYGKPMDETRYKYIIKVCALDKDIDGFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTASILFNDCVRSALRRKTVIVVTHQVEFLSKVDKILVMEGGEITQIGGYEDLLTARTAFEQLLSAHREAITGLEISNENKREFENVDTIQPEDSHVFNLTKGGSDGDISSKGQLTQEEEKEIGDVGWKPFGDYIFFPKGSLLLCLSTLSQLAFVGFQTASTYWLALAIEIPEVTSSILIGVYAVTSFLSIVFVYLRSFFGAQLGLKASKAFFSAFTDAIFNAPMLFFDSTPVGRILTRASSDLSILDFDIPFTTIFVAAEIAELLTMIGIMVSVTWQVLIVAFLAMVASKYIQGYYQASAREIIRINGTTKAPLMNFTAETSLGVITIRAFNMTDRFFKNYLKLVDTDATMFFHSNAAIEWLVLRIEVLQNLTLFTAALLLVLLPKGYVAPGLVGLSLSYAFSLTATQVYLTRMFCNLSNYVISVERIKQFIHIPAEPSAIVEDNRPPSSWPYKGRIDLQSLEIRYHPNAPLVLKGISCTFKEGSRVGVVGRTGSGKTTLISALFRLVEPTRGDILIDGINTCSIGVKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKALEKCQLKATISGLPNLLDTSVSDEGENWSVGQRQLLCLGRVLLKRNRILVLDEATASIDSATDSILQRVIRQEFSRCTVITVAHRIPSVIDSDMIMVLSYGKLVEYDKPSKLMDIDSSFSKLVAEYWSNCNRNLLPKD* 1452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0979 1451 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 285 553 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr10g0979 1451 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 892 1167 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr10g0979 1451 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1206 1438 IPR003439 GO:0005524
Apr10g0979 1451 CDD ABC_6TM_ABCC_D1 286 561 IPR044746 GO:0140359
Apr10g0979 1451 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1193 1437 IPR027417 -
Apr10g0979 1451 CDD ABCC_MRP_domain2 1202 1422 - -
Apr10g0979 1451 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 59 1441 - -
Apr10g0979 1451 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 585 811 IPR027417 -
Apr10g0979 1451 SUPERFAMILY ABC transporter transmembrane region 889 1184 IPR036640 GO:0005524|GO:0016021
Apr10g0979 1451 CDD ABC_6TM_ABCC_D2 899 1179 IPR044726 GO:0140359
Apr10g0979 1451 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 591 812 IPR003439 GO:0005524
Apr10g0979 1451 ProSitePatterns ABC transporters family signature. 714 728 IPR017871 GO:0005524
Apr10g0979 1451 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 59 1441 - -
Apr10g0979 1451 Gene3D - 565 835 IPR027417 -
Apr10g0979 1451 Gene3D ABC transporter type 1, transmembrane domain 855 1185 IPR036640 GO:0005524|GO:0016021
Apr10g0979 1451 Gene3D ABC transporter type 1, transmembrane domain 266 564 IPR036640 GO:0005524|GO:0016021
Apr10g0979 1451 SUPERFAMILY ABC transporter transmembrane region 273 567 IPR036640 GO:0005524|GO:0016021
Apr10g0979 1451 SMART AAA_5 616 789 IPR003593 -
Apr10g0979 1451 SMART AAA_5 1230 1423 IPR003593 -
Apr10g0979 1451 Pfam ABC transporter 607 741 IPR003439 GO:0005524
Apr10g0979 1451 Pfam ABC transporter 1221 1369 IPR003439 GO:0005524
Apr10g0979 1451 Gene3D - 1187 1437 IPR027417 -
Apr10g0979 1451 CDD ABCC_MRP_domain1 589 789 - -
Apr10g0979 1451 Pfam ABC transporter transmembrane region 334 533 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr10g0979 1451 Pfam ABC transporter transmembrane region 921 1147 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0979 Apr-Chr10 22278220 22284484 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0979 576 801 Calmodulin-binding Proteins AT2G36910 29.032 3.71e-22 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0979 - - gmx:100813711 2407.87