Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0976 ATGTTGCATGATGCTGATGAGGAAGAACCCTCCAAGTCAGGAAGCAATCTTTGTAGCCAAGACAGAATGGAGAAGAACATGGAAATTGATAGCAGTCATGGAAAAGCTCCTACTACATCATCAAGCGAGTCACCACCAAGAACAATAGAATTATTATGCAAGTTTTGTAATAAGAAATTCACAAATAGCCAAGCTTTGGGTGGACATCAAAATGCCCACAAGGATGAAAGAGCAGCAGCAAAAAAGCAAAAGATTCTTAGCATGGCTTCTGCTTACAAAGACTCATCGCTTGATTATTCCACCTTTGCTTCAAATCAAGCTTATGGATTTGGTGGCAGAACAATGGGGTTTCATCAAACTAAGCCTCATGACTATAAATGGCCTCATATGCAACTCAAACATGACTCTTGTGATGATCCATGGCAAAGGCACCACATTATGAATCGTTCTCAACCCACTTTGCATCTCTTGCAGACTTTGATGGCCGGTGGGAGTGGATTTCATCAACACCACAAATCCGATCAATCTGTATTTTTTACTACATCTAGTGGAAGACCACAAAATTTAGGGTTGCAACCACATTTGTTACATCCTAGTTTATGTGACAATGAGAAGTTTGGTCAAGCAAGCAATTTTCCAGTAGGATCTCAAAATGCTAGCTTAGAGAGACATGATTTCAATGTCAAGCCTTTACGAGATAGTGAGAATTTGGATCGAGCAAGCGATTCTTCAACAAGACCTCTAAATGCAAGTACTGAGGGACTTGATAATATTTCTGGCCATGTAAGTAATTCTCCTTCAATGCCTGTGAAAGGAACTGTAGAGGGGCTTGATTTGACTCTCAAGCTTTAA 852 0.4014 MLHDADEEEPSKSGSNLCSQDRMEKNMEIDSSHGKAPTTSSSESPPRTIELLCKFCNKKFTNSQALGGHQNAHKDERAAAKKQKILSMASAYKDSSLDYSTFASNQAYGFGGRTMGFHQTKPHDYKWPHMQLKHDSCDDPWQRHHIMNRSQPTLHLLQTLMAGGSGFHQHHKSDQSVFFTTSSGRPQNLGLQPHLLHPSLCDNEKFGQASNFPVGSQNASLERHDFNVKPLRDSENLDRASDSSTRPLNASTEGLDNISGHVSNSPSMPVKGTVEGLDLTLKL* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0976 283 MobiDBLite consensus disorder prediction 1 46 - -
Apr10g0976 283 Gene3D Classic Zinc Finger 51 106 - -
Apr10g0976 283 PANTHER ZINC FINGER PROTEIN JAGGED 35 283 IPR045320 GO:0003700
Apr10g0976 283 MobiDBLite consensus disorder prediction 230 283 - -
Apr10g0976 283 MobiDBLite consensus disorder prediction 241 270 - -
Apr10g0976 283 ProSiteProfiles Zinc finger C2H2 type domain profile. 51 78 IPR013087 -
Apr10g0976 283 ProSitePatterns Zinc finger C2H2 type domain signature. 53 73 IPR013087 -
Apr10g0976 283 PANTHER ZINC FINGER PROTEIN KNUCKLES 35 283 - -
Apr10g0976 283 MobiDBLite consensus disorder prediction 32 46 - -
Apr10g0976 283 SUPERFAMILY beta-beta-alpha zinc fingers 52 78 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0976 Apr-Chr10 22257802 22258653 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0976 46 113 C2H2 Transcription Factor Family AT5G57520 47.059 1.29e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr10g0976 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0976 - - aprc:113851019 584.719