Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr10g0976 | ATGTTGCATGATGCTGATGAGGAAGAACCCTCCAAGTCAGGAAGCAATCTTTGTAGCCAAGACAGAATGGAGAAGAACATGGAAATTGATAGCAGTCATGGAAAAGCTCCTACTACATCATCAAGCGAGTCACCACCAAGAACAATAGAATTATTATGCAAGTTTTGTAATAAGAAATTCACAAATAGCCAAGCTTTGGGTGGACATCAAAATGCCCACAAGGATGAAAGAGCAGCAGCAAAAAAGCAAAAGATTCTTAGCATGGCTTCTGCTTACAAAGACTCATCGCTTGATTATTCCACCTTTGCTTCAAATCAAGCTTATGGATTTGGTGGCAGAACAATGGGGTTTCATCAAACTAAGCCTCATGACTATAAATGGCCTCATATGCAACTCAAACATGACTCTTGTGATGATCCATGGCAAAGGCACCACATTATGAATCGTTCTCAACCCACTTTGCATCTCTTGCAGACTTTGATGGCCGGTGGGAGTGGATTTCATCAACACCACAAATCCGATCAATCTGTATTTTTTACTACATCTAGTGGAAGACCACAAAATTTAGGGTTGCAACCACATTTGTTACATCCTAGTTTATGTGACAATGAGAAGTTTGGTCAAGCAAGCAATTTTCCAGTAGGATCTCAAAATGCTAGCTTAGAGAGACATGATTTCAATGTCAAGCCTTTACGAGATAGTGAGAATTTGGATCGAGCAAGCGATTCTTCAACAAGACCTCTAAATGCAAGTACTGAGGGACTTGATAATATTTCTGGCCATGTAAGTAATTCTCCTTCAATGCCTGTGAAAGGAACTGTAGAGGGGCTTGATTTGACTCTCAAGCTTTAA | 852 | 0.4014 | MLHDADEEEPSKSGSNLCSQDRMEKNMEIDSSHGKAPTTSSSESPPRTIELLCKFCNKKFTNSQALGGHQNAHKDERAAAKKQKILSMASAYKDSSLDYSTFASNQAYGFGGRTMGFHQTKPHDYKWPHMQLKHDSCDDPWQRHHIMNRSQPTLHLLQTLMAGGSGFHQHHKSDQSVFFTTSSGRPQNLGLQPHLLHPSLCDNEKFGQASNFPVGSQNASLERHDFNVKPLRDSENLDRASDSSTRPLNASTEGLDNISGHVSNSPSMPVKGTVEGLDLTLKL* | 284 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr10g0976 | 283 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - | |
Apr10g0976 | 283 | Gene3D | Classic Zinc Finger | 51 | 106 | - | - | |
Apr10g0976 | 283 | PANTHER | ZINC FINGER PROTEIN JAGGED | 35 | 283 | IPR045320 | GO:0003700 | |
Apr10g0976 | 283 | MobiDBLite | consensus disorder prediction | 230 | 283 | - | - | |
Apr10g0976 | 283 | MobiDBLite | consensus disorder prediction | 241 | 270 | - | - | |
Apr10g0976 | 283 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 51 | 78 | IPR013087 | - | |
Apr10g0976 | 283 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 53 | 73 | IPR013087 | - | |
Apr10g0976 | 283 | PANTHER | ZINC FINGER PROTEIN KNUCKLES | 35 | 283 | - | - | |
Apr10g0976 | 283 | MobiDBLite | consensus disorder prediction | 32 | 46 | - | - | |
Apr10g0976 | 283 | SUPERFAMILY | beta-beta-alpha zinc fingers | 52 | 78 | IPR036236 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr10g0976 | Apr-Chr10 | 22257802 | 22258653 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Apr10g0976 | 46 | 113 | C2H2 Transcription Factor Family | AT5G57520 | 47.059 | 1.29e-10 | 57.0 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Apr10g0976 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr10g0976 | - | - | aprc:113851019 | 584.719 |