Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0967 ATGGCGACAGTACCTGGGCAACTCGTGTGGGAGATCGTGAAGGAAAACAACTCTTTTTTGGTCAAACAATTTGGAAGGGGCACTCAGAGCGTCCAATTCAGCAGAGAAAGCAACAATCTCTACAATCTCAACTCTTTCAAGTACTCTGGTTTGGCAAACAAGAAAACTGTTACTGTTCAGCCTGTGGGTAAGGATCTGTCTGTGTTGTTGGCTACAACCAAGACAAAGAAGCAGAACAAGCCTGCTGCTTTGCTTCACAAATCTGTGATGAAGAAAGAGTTCAGGAGGATGGCAAAGGCTGTTGAAAACCAGGTGGCAAATAATTACTACAGGCCTGATCTCAAGAAGGCAGCTCTTGCAAGGTTGAGTGCTGTTCATAGAAGCCTCAAAGTTGCCAAGTCTGGTGTCAAGAAGAGGAATAGGCAGGCCGTGAAGGTCCATGGTAGGAAGTGA 453 0.4592 MATVPGQLVWEIVKENNSFLVKQFGRGTQSVQFSRESNNLYNLNSFKYSGLANKKTVTVQPVGKDLSVLLATTKTKKQNKPAALLHKSVMKKEFRRMAKAVENQVANNYYRPDLKKAALARLSAVHRSLKVAKSGVKKRNRQAVKVHGRK* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0967 150 PANTHER 60S RIBOSOMAL PROTEIN L28-1-LIKE 1 150 - -
Apr10g0967 150 PANTHER 60S RIBOSOMAL PROTEIN L28 1 150 IPR002672 GO:0003735|GO:0005840|GO:0006412
Apr10g0967 150 Pfam Ribosomal L28e protein family 8 128 IPR029004 -
Apr10g0967 150 Gene3D - 6 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0967 Apr-Chr10 22170421 22172661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0967 1 143 Cytoplasmic Ribosomal Protein Gene Family AT4G29410 72.727 4.84e-75 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0967 K02903 - gmx:100499921 276.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2454 2 29011661 29014001 Apr10g0967 10 22170421 22172661 ECH
Apr10g0967 10 22170421 22172661 Apr10g0967 10 22170421 22172661 ECH