Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0961 ATGGGCAAAGCTAGATTAGGAAATTCTAGGATAAAACCACCATTTCTATTAAAGCTGTTGGATCTACAAGTAGAACTGGTAGCAAGGATCACTTTCTACTCCAAGTTTCATCAGAATTTACAATCATCCATGGATGGTTTAAGTTGGGATGCCTCAGAACTTGCAACAAACACACCAATTCTGTGGAGTACTCTTCAGCAACAAGACTTTGAAGGAGGCTACTCCATGCCCAACATAAGTTCAAGTGTTCTTAATCAACTACAAGAGATGCAAAAGGCTCCAACATGTCATGCATATGCAAATTCTGAACGAGTGATTTATCAGTCAGTTGATGCTACCACTTCAGAGATGATTGATGTGATGCCAAACACAAATATGTCACAGCATGCATCAACCATGGAAGGGAAATCAGGAGCTGGAGCCAGTTGGAGAGAGGCTTTAACATCTCAATCATGCCCATCTCTATCAGTCAATGGACCTCACAATATGAACCTGATTAGCAACTACATGCCAGATTTCAACATGGCCCACCACCACCACCACCACCACCAACAACAACAACAACAACAACAACTCATCAATGGTTCTAAAAATGGGAAAGGTGCTTTCTCTCCTGAGTCTTTTGATTGCTTGCTTTCAGATACAAACAGCAACACAGACACTTCTGTGAAAGATGATGGAATTTCAATGATTTTGTCTGACTGTGGAAACTTATGGAACTTCAGTTATGGCAGTGCAGCAACTTCCACTGGTGAATCTGAGAGTAATGCTTCCAATGGAAAAAACAAAGACATGCAGTGTCCAGTTAATGAACTTGATGAAACAGTTTCTCAAAGCTCTTCAGATCAACATGTCAATCAAGGAAAAGAAATAGAATCAAAGGTTATTTGTTCAAAGAGGAATAATGATCAAGCTGAAATGATCAAAGTTGGTGCCACTGCCAGTGATTCCTGCTTCAGTATTGCTAACAATTCTTCTATTGAAGGTGGTTTCAAGCTTATCTCAAATAATCCACCAAAATGCAAGAAACCCAGATGGGATAGGAGTTCTTGTTCATCAAATATCAATTTCCAGCAACCAAATTCATCCGTGTCTTGTTCCATTGAAGAGCCTGATCCAGAGGCCATAGCACAAATGAAGGAAATGATATATAGGGCTGCAGCATTTAGGCCTGTGAACTTGGGCTTGGAAGTGGTTGAAAAGCCTAAGAGGAAGAATGTGAGGATATCAACTGATCCACAAACAGTGGCTGCAAGGCAGAGAAGGGAGAGAATAAGTGAGAGGATTAGGGTTTTGCAGAAGCTTGTGCCTGGAGGAAGCAAAATGGACACTGCATCCATGCTTGATGAGGCTGCAAACTATCTCAAGTTTCTAAGGTCACAAGTTAAGGCATTAGAAAGTCTAGGAAACAAAGTTGATGCATTGAATTGTCCTCCTACTAGCATTGCTTTCTCTTTCAACCCTTCATTTCCCATGCAAACACCTCTTAGCCACATTCATCATTCCCAGGGTTGA 1515 0.4099 MGKARLGNSRIKPPFLLKLLDLQVELVARITFYSKFHQNLQSSMDGLSWDASELATNTPILWSTLQQQDFEGGYSMPNISSSVLNQLQEMQKAPTCHAYANSERVIYQSVDATTSEMIDVMPNTNMSQHASTMEGKSGAGASWREALTSQSCPSLSVNGPHNMNLISNYMPDFNMAHHHHHHHQQQQQQQQLINGSKNGKGAFSPESFDCLLSDTNSNTDTSVKDDGISMILSDCGNLWNFSYGSAATSTGESESNASNGKNKDMQCPVNELDETVSQSSSDQHVNQGKEIESKVICSKRNNDQAEMIKVGATASDSCFSIANNSSIEGGFKLISNNPPKCKKPRWDRSSCSSNINFQQPNSSVSCSIEEPDPEAIAQMKEMIYRAAAFRPVNLGLEVVEKPKRKNVRISTDPQTVAARQRRERISERIRVLQKLVPGGSKMDTASMLDEAANYLKFLRSQVKALESLGNKVDALNCPPTSIAFSFNPSFPMQTPLSHIHHSQG* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0961 504 Pfam Helix-loop-helix DNA-binding domain 419 458 IPR011598 GO:0046983
Apr10g0961 504 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 414 469 IPR036638 GO:0046983
Apr10g0961 504 SMART finulus 415 464 IPR011598 GO:0046983
Apr10g0961 504 MobiDBLite consensus disorder prediction 186 201 - -
Apr10g0961 504 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 409 458 IPR011598 GO:0046983
Apr10g0961 504 Coils Coil 448 468 - -
Apr10g0961 504 PANTHER TRANSCRIPTION FACTOR BHLH87 44 496 - -
Apr10g0961 504 MobiDBLite consensus disorder prediction 177 209 - -
Apr10g0961 504 Gene3D - 414 476 IPR036638 GO:0046983
Apr10g0961 504 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 44 496 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0961 Apr-Chr10 22127209 22134039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0961 126 503 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 45.802 4.18e-81 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr10g0961 HLH 1.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0961 - - vra:106773034 671.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0961 10 22127209 22134039 Apr10g0961 10 22127209 22134039 ECH