Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0960 ATGATGCCAATGTCACTGCATTTTCCTTTAGTATTGCTTGAGGTCCTTATTGCTGTGGTTCTGATTCAAGCTCAGGATCAACTAGGATTCATAAGCATAGATTGTGGGCTACCTGCAAATTCAAGCTATACTGAGAAGAGCACGGGCATATTTTACATTTCAGATGCTAAATTCATAGATACTGGTGTAAGTAAGAGTGTACCACCTGCAGAGAAGAGTAATCATCAACAGCAACTAGGAAATGTGAGGAGCTTTCCTAGTGGAGTGAGAAACTGTTACAAAATAAATGTAACCAAGGGTTCTAAATATTTAATCAGAGCTACTTTCTTTTATGGAAACTATGATGGTCTAAATCAGGTTCCACAGTTTGATCTTCATCTTGGGGCTAATTTATGGGACACAGTGAAGTTCTCTAATGCATCACTCAGCACAATCGATGAGATAATTCACACCCCTTCACTAGATTACATACATCTGTGTCTAGTTAACACAGGCACTGGGACTCCATTCATTTCAGCCATAGAATTAAGGACTTTGAACAATGCTTCTTATGTCACAAAACCACCTGCATCATTAGCATGCCTCCAACGATTTGATTTAGGTTCCACCACTAACTTAGAGTACAGGTATGGATATGATGCTTATGACCGAATCTGGATGTCTGTTGCTTCCAAAAGGTGGTCACAATTAAGCACCTCACTTAGCTCTGGTGATCTTGCTGAAAATGTCTATAATCTACCAGCAGTTGTCATGAGCACTGCCGCAACACCACTGAATGCTAGTTTTTCCTTTGAGCTCAATTGGGATGCGGATAATGTAAATGACCAATACTACATCTACATGCACTTCAATGAGGTTGAAAAGTTGGGACCGAATGAAACTAGATCATTCAGTATCTCCCTTAATGGCAAGTTTTGGTATGGACCTGTGATGCCTGTATACCAAGTAGCAAATAGCGTATTTACTACAACACCTTTGACTGGACTCTCAAGGTATCAATTTTTGTTATATAAGACATTGCTTGCTACCGTTCCACCCATCATCAATGCCTTTGAGATTTATAAAGTTACAGATTTCTCACAATCAGAAACTGAACAAGATGATGTTGATGCTATCACAAACATTAAGAGCATTTATGGGGTGGCTAGAAATTGGCAAGGAGATCCGTGTGCCCCTGTGGCATACATGTGGGAAGGTCTAAATTGTAGTTTTGATGGTGATAACTCCCCAAGAATCACATCCTTGAATTTGTCTTCTAGTGGACTAACCGGGCAGATAGCATCTTCAATCTCCAAGCTCATTATGCTACAATACTTAGATTTATCAAACAATAGCTTAAGCGGGCCAGTACCTGATTTTCTAACACAACTGCAGTCACTAAAAGTCTTAAACTTGGGGAATAACAATCTTACAGGTTTAGTCCCAAGTGGACTCGTTGACAGATCAAAGGAGGGTTCTCTGTCATTGAGCGTGGGGCAAAATCCAAATCTATGTGAACCTGATTCATGCAACCAACAAACAGATGATCATAATAAAGGGAAGAAGAAACATAATATAGTTATTCCGGTAGCAACAGTTGCTGGGATTCTGGTGCTCCTAGTAATTGTAGTTGCAGCTATCATCTGTGGCCTTAAAAAGAGAAAACCACACGCATCTGTGACCATTGATGTGGATCACATTACGCCAAGTGGATCACAATTTGAAGTCAAACAACGGCAGTATACGTTCAATGATCTTGTTAAGATCACCAACGACTTTGACAGAATTCTTGGTAGAGGTGGATTTGGAAAAGTTTATCATGGATATATTGATGACACTCAAGTAGCTGTCAAGATGCTTTCTTCATCCTCAGTACGAGGATATGAACAATTTCTAGCGGAGGTTAAACTTCTGATGAGAGTTCATCATAGAAATTTAACTTCTCTTGTTGGATATTGCAAAGAGGAAAACAACATAGGACTCATCTATGAATATATGGCAAATGGAAACCTGGATGAAATTCTTTCCGGAAAAAATAGAAGGGCAAAGTTCTTGTCATGGGAAGACAGGCTCCAAATAGCACTGGATGCAGCCCAAGGTGAAAGAAAAATAAATACAAGAATTTCTCCTTCAATCCTTTGATTCTTCCCATCTATTTATATTGAGAATTTGATATCAGGACTGGAATATCTGCATAACGGTTGTAAGCCACCAATAATCCACAGAGATGTAAAAAGTACAAATATTTTACTAAATGAAAAATTTCAAGCAAAATTATCTGATTTTGGCCTATCCAAATGCTTTCCCACTGATGGGGGCACACATTTGTCCACTGTTGTTGCTGGCACTCCCGGATATTTGGATCCTGACTACAGCATATCAAACAGGTTGACAGAGAAAAGTGATGTTTATAGCTTTGGAGTTGTTCTTTTGGAGATAGTCACAGGTAAACCAGCTATAACGTCAAAACCAAATGATAAGATTCACATAAGTCAGTGGGTTAGCTCCATGCTTTCTAATGGAGATATAAAAAACATTGTTGACTCAAAATTACAAGATTTTGACACTAGTTCTGTCTGGAGAGTTGTTGAAATAGGCATGGCTTCTGTGTCCATTAATCCTACTAAAAGGCCAAGCATGAGTGATGTAGTCAACGAGCTGAAGGAGTGTTTGGCTACAGAATTAGCTCGAAAAAATACTAGTTGTGACACTGAAAACAATGATTCAGTTGAGTTGGTCACTATGAATTTGACAACTGAATTTGGTCCCCCAGCTAGGTAG 2760 0.3906 MMPMSLHFPLVLLEVLIAVVLIQAQDQLGFISIDCGLPANSSYTEKSTGIFYISDAKFIDTGVSKSVPPAEKSNHQQQLGNVRSFPSGVRNCYKINVTKGSKYLIRATFFYGNYDGLNQVPQFDLHLGANLWDTVKFSNASLSTIDEIIHTPSLDYIHLCLVNTGTGTPFISAIELRTLNNASYVTKPPASLACLQRFDLGSTTNLEYRYGYDAYDRIWMSVASKRWSQLSTSLSSGDLAENVYNLPAVVMSTAATPLNASFSFELNWDADNVNDQYYIYMHFNEVEKLGPNETRSFSISLNGKFWYGPVMPVYQVANSVFTTTPLTGLSRYQFLLYKTLLATVPPIINAFEIYKVTDFSQSETEQDDVDAITNIKSIYGVARNWQGDPCAPVAYMWEGLNCSFDGDNSPRITSLNLSSSGLTGQIASSISKLIMLQYLDLSNNSLSGPVPDFLTQLQSLKVLNLGNNNLTGLVPSGLVDRSKEGSLSLSVGQNPNLCEPDSCNQQTDDHNKGKKKHNIVIPVATVAGILVLLVIVVAAIICGLKKRKPHASVTIDVDHITPSGSQFEVKQRQYTFNDLVKITNDFDRILGRGGFGKVYHGYIDDTQVAVKMLSSSSVRGYEQFLAEVKLLMRVHHRNLTSLVGYCKEENNIGLIYEYMANGNLDEILSGKNRRAKFLSWEDRLQIALDAAQGERKINTRISPSIL*FFPSIYIENLISGLEYLHNGCKPPIIHRDVKSTNILLNEKFQAKLSDFGLSKCFPTDGGTHLSTVVAGTPGYLDPDYSISNRLTEKSDVYSFGVVLLEIVTGKPAITSKPNDKIHISQWVSSMLSNGDIKNIVDSKLQDFDTSSVWRVVEIGMASVSINPTKRPSMSDVVNELKECLATELARKNTSCDTENNDSVELVTMNLTTEFGPPAR* 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0960 918 ProSitePatterns Protein kinases ATP-binding region signature. 590 611 IPR017441 GO:0005524
Apr10g0960 918 SUPERFAMILY L domain-like 366 479 - -
Apr10g0960 918 PANTHER PUTATIVE-RELATED 16 697 - -
Apr10g0960 918 CDD STKc_IRAK 590 881 - -
Apr10g0960 918 PANTHER OS07G0107800 PROTEIN-RELATED 16 697 - -
Apr10g0960 918 ProSitePatterns Serine/Threonine protein kinases active-site signature. 731 743 IPR008271 GO:0004672|GO:0006468
Apr10g0960 918 PANTHER PUTATIVE-RELATED 718 918 - -
Apr10g0960 918 SUPERFAMILY Protein kinase-like (PK-like) 568 879 IPR011009 -
Apr10g0960 918 Pfam Protein kinase domain 587 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g0960 918 ProSiteProfiles Protein kinase domain profile. 584 883 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g0960 918 Gene3D Transferase(Phosphotransferase) domain 1 659 906 - -
Apr10g0960 918 PANTHER OS07G0107800 PROTEIN-RELATED 718 918 - -
Apr10g0960 918 PRINTS Leucine-rich repeat signature 457 470 - -
Apr10g0960 918 PRINTS Leucine-rich repeat signature 436 449 - -
Apr10g0960 918 Gene3D Phosphorylase Kinase; domain 1 571 658 - -
Apr10g0960 918 Pfam Leucine Rich Repeat 459 477 IPR001611 GO:0005515
Apr10g0960 918 Pfam Leucine Rich Repeat 436 453 IPR001611 GO:0005515
Apr10g0960 918 SMART serkin_6 584 883 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g0960 918 Pfam Malectin-like domain 33 356 IPR024788 -
Apr10g0960 918 Gene3D Ribonuclease Inhibitor 370 490 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0960 Apr-Chr10 22118308 22122929 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0960 2 918 Receptor kinase-like Gene Family AT1G51800 48.235 0.0 835
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Apr10g0960 Malectin_like 2.2e-110 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0960 - - aprc:113849011 1791.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0960 10 22118308 22122929 Apr10g0960 10 22118308 22122929 ECH