Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0941 ATGTGGCAAAGAAACCACAAGTCTTCAGAGGAGAGGAAACTGGAGCTTAGGCTTGGTCCACCTGGTGAGGAGTCTCTCAATGAAAGCATAAAAAATGGCAACATAGGAAGAGATGAATCATCATCACTCCCGCTTGGTTACTTCTCAACTCAGAAAATTTCTACTTCTGACAAACCAGGTCCAGGTGGGGTTATATTGCCCCCTGTGTGGCCTTCCACATCCTACCATCACCACAGTCAACACCAGGCTAAAGCTTCATCATTTCTTAGGCTTCCATCAAGCCCGAAAAACATGCTAGTGATGGGAAAGGATGTGTCACAGCCCTGTTGCTTAGACTTGCAGGTTGCAGAGAAAAAAGAATTCAGACCCTCTTCTTCATATACAGCTGTGTCCAAAAGAAATGCTTCTGGGCCAGTAGTGGGTTGGCCACCAATTCGTTCATTTAGGAAGAACATTGCTAGTGGAAGCTCTTCTAAACTGCCATCTGGGTCCCAACAACATCATCAACATGTTGTTCCAGACAAGTTTGCTAGTCACAAACCTACTCACAACTCTGGTAAAGGCTTGTTTGTGAAGATCAATATGGATGGAGTTCCCATTGGGAGAAAAGTGGACATCAGTGCTTATGATAGCTATGAAAAGCTTTCCTCAGCTGTTGATGAGCTCTTTAGAGGCCTCCTTTCAGAGATGAATTTATCTCACATTATCTCTTCCCGCTGCTGTTCTGCTCAAAGAGATTCCTCTGCTAGTGGAATTCAAAACAAGGAAGAGGAAGAGAAAATGAATATGGGTTTATTGGTTGGAAGTGGGGAATATACTCTTGTTTATGAGGATAATGAAGGAGACCGGATGCTAGTTGGGGATGTGCCATGGCACATGTTTGTGTCAACAGTGAAGAGGCTGAGGGTGTTGAAGAGTTGTGATCTTCCTGCTTTTACCCTTCAATTGGAGGCTTCAACTTAA 963 0.4403 MWQRNHKSSEERKLELRLGPPGEESLNESIKNGNIGRDESSSLPLGYFSTQKISTSDKPGPGGVILPPVWPSTSYHHHSQHQAKASSFLRLPSSPKNMLVMGKDVSQPCCLDLQVAEKKEFRPSSSYTAVSKRNASGPVVGWPPIRSFRKNIASGSSSKLPSGSQQHHQHVVPDKFASHKPTHNSGKGLFVKINMDGVPIGRKVDISAYDSYEKLSSAVDELFRGLLSEMNLSHIISSRCCSAQRDSSASGIQNKEEEEKMNMGLLVGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSCDLPAFTLQLEAST* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0941 320 Pfam AUX/IAA family 14 309 IPR033389 -
Apr10g0941 320 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 3 315 - -
Apr10g0941 320 MobiDBLite consensus disorder prediction 1 19 - -
Apr10g0941 320 SUPERFAMILY CAD & PB1 domains 181 303 - -
Apr10g0941 320 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 315 IPR003311 GO:0005634|GO:0006355
Apr10g0941 320 MobiDBLite consensus disorder prediction 1 44 - -
Apr10g0941 320 ProSiteProfiles PB1 domain profile. 188 306 IPR000270 GO:0005515
Apr10g0941 320 Gene3D - 183 318 - -
Apr10g0941 320 MobiDBLite consensus disorder prediction 27 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0941 Apr-Chr10 21944207 21948189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0941 131 320 B3 DNA Binding Superfamily AT3G61830 23.267 2.67e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Apr10g0941 AUX_IAA 3.5e-65 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0941 K14484 - gmx:100793822 473.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2470 2 29125529 29129227 Apr10g0941 10 21944207 21948189 ECH
Apr10g0941 10 21944207 21948189 Apr10g0941 10 21944207 21948189 ECH