Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0912 ATGGGCAGTTTAGTGGCAGTGACACTTATCTCTGCCATGCTCATGATCATGCTAATGCCCACTTGCACGGCACTTTCCAATATAAATAAAGAAAAACACGCTCTGCTCCAAACGGGTTGGTGGAGTCATTACCGAAATATCTCAAACCATTGTGATTGGAAGGGTATCACATGCAGTGAAGATGGAAGTGTTACAGAGATTTATGGATTGGACTTAAGTATTCCTCCTTCACAAGAGATGCTGGAGATTGAGAAGTTGAACGTCACTGCCTTCACGAATTTAGTCACTCTAGATCTATACGGAATGAGACTCAGAGGAAGCATCCCTACAGAAATAAGCAGACTTACAAAGCTTGAATTTCTTTACCTGTCCAACAATCGCCTTCGTGGTCCTATACCCCTCCAACTTGCCAATTTGACACGTTTGAAGGAATTGTCTCTCTCCAATAATTCCCTTTCCGGTTCAATCCCTTCCACATTGGGTCAATTGAAGAATTTAACCTCTCTCTACCTTTATTCAAACCAAATTGAAGGTCCTATTCCAATAGAACTAGGGAATCTGACACAATTGATCACATTATCTGCCTTTAATAATTCACTTGCCGGTTCAATCCCTTCTACATTGGGTAAATTGAAGAATTTAATACATCTCTACCTTGATTCAAACCAACTTACAGGTCCCATCCCTGCGGAAATAGGGAATTTGACACATTTGAGGTATCTATATCTCTCACACAATTCACTTACTGGTTCAATTCCGTATACTTTGGGTTTATTAGCGAATTTGACCTATCTTCGCCTTGATTCTAACCACATTGAAGGTCCAATACCAATGGAATTAGGGAATTTAAAAAGTCTATGGTTAGTAGATCTCTCATACAATTTACTCACTGGTTCAATCCCTTCTACTTTGGGTCAATTGAAGAATTTGACACTTCTCTTTCTTCGTTCTAACCAAATAGAAGGACACATACCTGAAGAACTAGGAAATTTGTCCAATTTAGACACTTTACATCTTTCGCATAATAAGATCTCTGGTTTAATACCTCCAAATATTTTTCAAATGCCCAACATGCATTCTCTATTTCTTTCATCAAATCAGTTATGTGGCTCACTCCCAATAGAGAATTTGATTTGTCCCTCTTTGACAACATTAGATTTAAGCTTTAACATTTTAAACGGCAGCATCAGTTCCCAACTTAGTTGTGTCAATAACCTTAATCTTAGCCACAATTTTCTCAGTGGTGAGATTCCATCACTCAGGGGAATGAAATCTGTGTTGGATAGATTGGATCTTAGTTATAATAATCTCACAGGTAAACTACCCAAGGAACTTGCTAGGCTATCATACCTAAATCTTTCATACAATTCTTTTGACTTTTCCCAAGACTACTGTTCTTTCCCAAAAAACTCACTATTTAGTTACAACCCACCAAATTTCACATCATGTCAAGCTGACCCACAAACCAATTCACAAACAAGTAAAGCTAAGTTTATCATCATGATTGTTCTTCCTATTATTTGCATCATCTTTTTTGTATTTCTTCCATTGTTATACTTCAAAAGATGTATGTCTAAGACCAAACTGGAAGGAAGGACAAAAAAAAATGGAGACTTGTTTTCTATATGGAACTATGATGGTAAAATTGCATTTGAAGACATCATTGAAGCCACTGAGGACTTTCACATCAAGTACTGCATTGGAACAGGTGCATATGGCAGTGTTTATAGAGCACAATTGCCAAGTGGCAAAATTGTTGCATTGAAGAAACTTCACCAAATGGAATCTGAAAACCCATCATTTGACAAGAGTTTTCGGAACGAGGTCAAGATGCTAACAGAAATACGCCACAAAAACATTGTGAACCTTCATGGCTTTTGCCTCCACAATCGGTGCATGTTTCTAATCTATCAATACATGGAAAGTGGTAGCTTATTTTATGCCTTGAATAATGACATGGAAGCTATGGAATTAAATTGGAGCAAGAGGGTGAATATCATTAGGGGAATGGCACATGCTTTGTCCTACCTGCATCATGATTGTACCCCACCCATTCTACACAGAGATGTTACAAGTAGCAATGTTTTATTGAACTCTCAGTTGGAGGCTTTTGTCTCCGACTTTGGCACAGCTAGATTTCTTGATCCCGACTCTTCAAATCAAACCCTAGTAGTTGGCACATGTGGATATGTTGCCCCAGAGCTTGCTTATACATTGACTGTGACAGAAAAATGCGATGTTTATAGTTTTGGAGTGGTAACACTAGAAACATTAATGGGAAGGCATCCTGAAGAGCTAATATCGTCTCTGTCAAATTCATCTACTCAAAATATGTTGTTCAAGGATCTCTTGGATCCTCGTCTTCCTCTTCCTTCAAATTCAAAAGTTGCTGATGAAATACTTCTTGTGGCAACACTAGCACTGCCATGCTTGCTTCCCAAACCAAATTCCAGGCCATCGATGCAGCAAGTGGCTCAGCAACTTTGTGACTCCAAACATCCAATGCCTTTTCCTCTCTATGAAGTTTCCATCCTTCAGTTGATGACTAAAGGGATTCATCTTCTTTCATCTGAGTATCAAAAGGGAAATTTTCAACAAGAAAACTAA 2607 0.384 MGSLVAVTLISAMLMIMLMPTCTALSNINKEKHALLQTGWWSHYRNISNHCDWKGITCSEDGSVTEIYGLDLSIPPSQEMLEIEKLNVTAFTNLVTLDLYGMRLRGSIPTEISRLTKLEFLYLSNNRLRGPIPLQLANLTRLKELSLSNNSLSGSIPSTLGQLKNLTSLYLYSNQIEGPIPIELGNLTQLITLSAFNNSLAGSIPSTLGKLKNLIHLYLDSNQLTGPIPAEIGNLTHLRYLYLSHNSLTGSIPYTLGLLANLTYLRLDSNHIEGPIPMELGNLKSLWLVDLSYNLLTGSIPSTLGQLKNLTLLFLRSNQIEGHIPEELGNLSNLDTLHLSHNKISGLIPPNIFQMPNMHSLFLSSNQLCGSLPIENLICPSLTTLDLSFNILNGSISSQLSCVNNLNLSHNFLSGEIPSLRGMKSVLDRLDLSYNNLTGKLPKELARLSYLNLSYNSFDFSQDYCSFPKNSLFSYNPPNFTSCQADPQTNSQTSKAKFIIMIVLPIICIIFFVFLPLLYFKRCMSKTKLEGRTKKNGDLFSIWNYDGKIAFEDIIEATEDFHIKYCIGTGAYGSVYRAQLPSGKIVALKKLHQMESENPSFDKSFRNEVKMLTEIRHKNIVNLHGFCLHNRCMFLIYQYMESGSLFYALNNDMEAMELNWSKRVNIIRGMAHALSYLHHDCTPPILHRDVTSSNVLLNSQLEAFVSDFGTARFLDPDSSNQTLVVGTCGYVAPELAYTLTVTEKCDVYSFGVVTLETLMGRHPEELISSLSNSSTQNMLFKDLLDPRLPLPSNSKVADEILLVATLALPCLLPKPNSRPSMQQVAQQLCDSKHPMPFPLYEVSILQLMTKGIHLLSSEYQKGNFQQEN* 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0912 868 SMART LRR_sd22_2 139 154 - -
Apr10g0912 868 SMART LRR_sd22_2 331 349 - -
Apr10g0912 868 SMART LRR_sd22_2 115 136 - -
Apr10g0912 868 SMART LRR_sd22_2 307 330 - -
Apr10g0912 868 SMART LRR_sd22_2 211 237 - -
Apr10g0912 868 SMART LRR_sd22_2 163 184 - -
Apr10g0912 868 Gene3D Transferase(Phosphotransferase) domain 1 640 835 - -
Apr10g0912 868 ProSiteProfiles Leucine-rich repeat profile. 333 355 IPR001611 GO:0005515
Apr10g0912 868 SUPERFAMILY L domain-like 29 299 - -
Apr10g0912 868 Gene3D Phosphorylase Kinase; domain 1 523 639 - -
Apr10g0912 868 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 26 300 - -
Apr10g0912 868 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 252 852 - -
Apr10g0912 868 ProSiteProfiles Leucine-rich repeat profile. 237 259 IPR001611 GO:0005515
Apr10g0912 868 Pfam Leucine Rich repeats (2 copies) 140 176 IPR025875 -
Apr10g0912 868 ProSiteProfiles Protein kinase domain profile. 561 836 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g0912 868 Gene3D Ribonuclease Inhibitor 276 376 IPR032675 -
Apr10g0912 868 Pfam Leucine rich repeat 214 272 IPR001611 GO:0005515
Apr10g0912 868 ProSitePatterns Protein kinases ATP-binding region signature. 567 589 IPR017441 GO:0005524
Apr10g0912 868 SMART LRR_typ_2 307 330 IPR003591 -
Apr10g0912 868 SMART LRR_typ_2 445 468 IPR003591 -
Apr10g0912 868 SMART LRR_typ_2 115 138 IPR003591 -
Apr10g0912 868 SMART LRR_typ_2 235 258 IPR003591 -
Apr10g0912 868 SMART LRR_typ_2 211 234 IPR003591 -
Apr10g0912 868 SMART LRR_typ_2 163 187 IPR003591 -
Apr10g0912 868 SMART LRR_typ_2 139 162 IPR003591 -
Apr10g0912 868 SMART LRR_typ_2 259 283 IPR003591 -
Apr10g0912 868 SMART LRR_typ_2 331 355 IPR003591 -
Apr10g0912 868 ProSitePatterns Tyrosine protein kinases specific active-site signature. 685 697 IPR008266 GO:0004672|GO:0006468
Apr10g0912 868 Pfam Protein kinase domain 562 827 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g0912 868 SUPERFAMILY L domain-like 222 458 - -
Apr10g0912 868 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 26 300 - -
Apr10g0912 868 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 252 852 - -
Apr10g0912 868 SUPERFAMILY Protein kinase-like (PK-like) 544 828 IPR011009 -
Apr10g0912 868 Gene3D Ribonuclease Inhibitor 377 484 IPR032675 -
Apr10g0912 868 Gene3D Ribonuclease Inhibitor 24 180 IPR032675 -
Apr10g0912 868 Gene3D Ribonuclease Inhibitor 181 275 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0912 Apr-Chr10 21604980 21607813 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0912 62 733 Receptor kinase-like Gene Family AT4G08850 36.695 2.85e-145 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Apr10g0912 Pkinase 3.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0912 - - gmx:100789677 1114.37