Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0889 ATGGCATCGCTTCTCTTACTACTTTCTCTTCTAATTGTTCCCTTCTTGTATTTCCCTTTCGTTTCTTGTTATTCCTCAAATGACATCAAATTGTCGTGCAGCCAAACGCCTAACCCTCAGCCATGTGAGTATTTCTTGATCAACAACCTTGCTCACATGCACAAACAAATCAAACAAAAAGCTGATTTCACTAACCTCTCTCTTCAACTGGCCCAAGAGAGAGCTATGATGAGCCATGCAAATGCACTTTCACTAGGCCCAAAGTGCCGGAACCCACGTGAAAAAGCTGCATGGGTTGATTGCCTTCAAATGTATGAGCACACCATTCATAGGCTCAATAAAACCTTAGACCCTAACACCAGGTGCTCCCAAACTGATTCTCAAACATGGCTCAGTGCTGCTCTCACCAACCTTGAGGCATGCAAAACCGGGTTTTATGAACTTGGGGTTCAAGACTATGTGTTGCCCCTGATGATGTCTAACAACGTTACTATGTTGCTAAGCAATGTTTTGGCTCTTAACAAGGTTGAATACCAAGAACCAAAAACATACAAAGATGGGTTCCCAACATGGGTTAAACCAGGTGACCGTAAATTGTTGCAAACTTCTTCTCCATCTTCTCAGGCAAATGCGGTGGTGGCTAAAGATGGGTCTGGCCATTTCACAACAATAAATGCTGCCATAAATGCTGCACCAAAAAGCAATAGTGGAAGATATGTGATATACGTGAAGGCTGGGGAATACAATGAACAAGTTGAGATAAAGTCTAACAACATCATGTTGATGGGAGATGGTATTGGGAAGACTATTATTACTGGTAGTAGTAGTGTTGGAGGAGGCTCCACAACCTTCCGTTCTGCCACTGTTGCTATTGATGGGGATGGGTTTATTGGTAGAGATATCACATTTAGGAACAGTGCAGGTGCATCAAATCACCAAGCCGTAGCACTACGCTCAGGATCAGATTTATCAGTGTTTTACAGATGTGGTTTCGAAGGATACCAAGACACACTCTATGTGTACACTGAGCGACAATTCTATAGGGAGTGTGACATCTATGGCACAGTTGACTTCATCTTTGGTAATGCTGCTGTGGTGTTCCAAAATTGTAACCTTTTTGCAAGAAACCCTCCAAACAAAATCAACACTATAACTGCCCAAGGCAGAACTGATCCAAACCAAAACACTGGAATTTCCATTCACAATTCAAAGGTTACAGCAGCCTCAGATTTGCAAACAGCTCAAAGTTCTGTTAAGACCTATCTTGGAAGACCATGGCAACAATATTCTAGAACAGTTTTCATTGAAACTTATCTTGATAGTTTGATTGATCCAAGTGGTTGGTTAGAATGGAGTGGTAATTTTGCATTAAGTACTTTGTATTATGGCGAGTACATGAACACAGGTCCTGGTTCATCCACTGCAGATCGGGTTAATTGGGGTGGTTATCATGTTATCACTAGTGCTTCCGAGGCATCAAAATTCACAGTTGCAAATTTCATAGGAGGAAGTTCATGGTTGCCAGCAACTGGAGTTCCATTCACCCCTGGTTTATAA 1557 0.42 MASLLLLLSLLIVPFLYFPFVSCYSSNDIKLSCSQTPNPQPCEYFLINNLAHMHKQIKQKADFTNLSLQLAQERAMMSHANALSLGPKCRNPREKAAWVDCLQMYEHTIHRLNKTLDPNTRCSQTDSQTWLSAALTNLEACKTGFYELGVQDYVLPLMMSNNVTMLLSNVLALNKVEYQEPKTYKDGFPTWVKPGDRKLLQTSSPSSQANAVVAKDGSGHFTTINAAINAAPKSNSGRYVIYVKAGEYNEQVEIKSNNIMLMGDGIGKTIITGSSSVGGGSTTFRSATVAIDGDGFIGRDITFRNSAGASNHQAVALRSGSDLSVFYRCGFEGYQDTLYVYTERQFYRECDIYGTVDFIFGNAAVVFQNCNLFARNPPNKINTITAQGRTDPNQNTGISIHNSKVTAASDLQTAQSSVKTYLGRPWQQYSRTVFIETYLDSLIDPSGWLEWSGNFALSTLYYGEYMNTGPGSSTADRVNWGGYHVITSASEASKFTVANFIGGSSWLPATGVPFTPGL* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0889 518 CDD PMEI-like_3 31 175 - -
Apr10g0889 518 Pfam Pectinesterase 210 503 IPR000070 GO:0030599|GO:0042545
Apr10g0889 518 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 176 IPR035513 -
Apr10g0889 518 SMART PMEI_2 24 173 IPR006501 GO:0004857
Apr10g0889 518 Gene3D - 204 518 IPR012334 -
Apr10g0889 518 SUPERFAMILY Pectin lyase-like 206 517 IPR011050 -
Apr10g0889 518 Pfam Plant invertase/pectin methylesterase inhibitor 28 173 IPR006501 GO:0004857
Apr10g0889 518 ProSitePatterns Pectinesterase signature 2. 352 361 IPR033131 -
Apr10g0889 518 PANTHER PECTINESTERASE 4 517 - -
Apr10g0889 518 TIGRFAM PME_inhib: pectinesterase inhibitor domain 3 175 IPR006501 GO:0004857
Apr10g0889 518 Gene3D Invertase/pectin methylesterase inhibitor family protein 23 176 IPR035513 -
Apr10g0889 518 PANTHER PECTINESTERASE 4 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0889 Apr-Chr10 21419590 21421715 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0889 1 518 Carbohydrate Esterase AT2G45220 64.672 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0889 K01051 - gmx:100781697 831.247