Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0888 ATGGAAACTTTTCAGTTATTCACAACACTTTTATTCGTCCCCTTGCTGTTTTCCTCTGTAGTTTATGGTTATTCATCGAATGACATCAAACTTTGGTGCAGCCAAACCCCAAACCCTCAACCGTGTGAGAATTTCTTGAGCAATAACCCCACTCACCAATACAAACCCATCAAGCAAAAATCAGATTTTTTCAAACTTTCATTGCAACTTGCACAAGAGAGAACACTCAAAGGCCATGCAAACACTCTCTCACTTGGCTCAAAATGCCGCAACCCACGTGAAACAGCTGCATGGGCTGATTGCGTTGAGCTTTATGAACAAACTATTCTTAAGCTCAACCAAACCATAGACCCTAACACAAAGTGTTCCCAAGTAGATACCCAAACATGGCTTAGCACAGCTCTCACTAACCTTGAGACATGCAAAGCTGGGTTCTACGAACTTGGGGTTCAAGACTATGTGTTGCCTTTAATGTCCAACAACGTTACCAAGTTGCTAAGCAACACCTTGGCTCTTAACAAGGTTCAATACGAAGAACCAATTTACAAAGATGGTTTCCCAACATGGGTGAAGCCAGGTGATAGAAAGCTGTTGCAAGCTGCTTCTCCAGCTTCTAAAGCAAACGTAGTTGTGGCTAAAGATGGGTCTGGAAAGTACACAACTGTCAGTGCAGCCGTGAATGCTGCTCCAAAGAGTAGTAGTGGAAGGTATGTGATATACGTGAAGGCAGGGATATACAATGAACAAGTTGAGATAAAGGCACATAATATAATGTTGGTTGGTGATGGTATGGGCAAAACAATCATCACAGGTAGCAAAAGTGTTGGAGGAGGCACCACAACCTTCCGTTCAGCCACTGTTGCTGTTGTTGGAGATGGATTCATTGCTCAAGATATCACGTTTAGGAACACTGCAGGTGCAGCAAACCACCAAGCTGTTGCATTGCGTTCTGGTTCAGACTTATCAGTATTTTACAGATGTAGTATTGAAGGTTATCAAGACACGCTGTATGTGCACTCTGAGAGGCAATTTTATAGAGAATGTGACGTTTATGGCACTGTTGACTTCATCTTTGGTAATGCTGCTGTTGTGTTCCAAAATTGTAATCTCTTTGCAAGAAATCCTCCAAACAAAGTAAACACAATCACTGCCCAAGGAAGAACCGATCCAAACCAAAACACAGGTATTTCTATTCACAATTCAAAGGTCATTGCTGCTTCAGACTTGAAACCAGTTCAAATCTCAGTTAAGACATACCTTGGAAGGCCATGGCAACAATATTCAAGAACAGTTTTCATGAAGACTTATCTTGATAGTTTAATCAATCCAATAGGTTGGTTAGAATGGAGTGGTAATTTTGCTTTAAGTACTTTGTACTATGGAGAATACATGAACACAGGACCAGGTGCTTCAACTGCAAACCGAGTTAAATGGTCAGGTTATCATGTCATTACAAGTGCTTCTGAAGCTTCAAAATTCACAGTTGGGAATTTTATTGGTGGCAACTCATGGTTACCTTCTACAAGTGTTCCTTTCACCTCTAGTCTTTAA 1551 0.4113 METFQLFTTLLFVPLLFSSVVYGYSSNDIKLWCSQTPNPQPCENFLSNNPTHQYKPIKQKSDFFKLSLQLAQERTLKGHANTLSLGSKCRNPRETAAWADCVELYEQTILKLNQTIDPNTKCSQVDTQTWLSTALTNLETCKAGFYELGVQDYVLPLMSNNVTKLLSNTLALNKVQYEEPIYKDGFPTWVKPGDRKLLQAASPASKANVVVAKDGSGKYTTVSAAVNAAPKSSSGRYVIYVKAGIYNEQVEIKAHNIMLVGDGMGKTIITGSKSVGGGTTTFRSATVAVVGDGFIAQDITFRNTAGAANHQAVALRSGSDLSVFYRCSIEGYQDTLYVHSERQFYRECDVYGTVDFIFGNAAVVFQNCNLFARNPPNKVNTITAQGRTDPNQNTGISIHNSKVIAASDLKPVQISVKTYLGRPWQQYSRTVFMKTYLDSLINPIGWLEWSGNFALSTLYYGEYMNTGPGASTANRVKWSGYHVITSASEASKFTVGNFIGGNSWLPSTSVPFTSSL* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0888 516 TIGRFAM PME_inhib: pectinesterase inhibitor domain 5 174 IPR006501 GO:0004857
Apr10g0888 516 Pfam Pectinesterase 208 502 IPR000070 GO:0030599|GO:0042545
Apr10g0888 516 ProSitePatterns Pectinesterase signature 2. 350 359 IPR033131 -
Apr10g0888 516 Gene3D - 203 516 IPR012334 -
Apr10g0888 516 PANTHER PECTINESTERASE 4 515 - -
Apr10g0888 516 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 175 IPR035513 -
Apr10g0888 516 CDD PMEI-like_3 31 174 - -
Apr10g0888 516 Pfam Plant invertase/pectin methylesterase inhibitor 28 172 IPR006501 GO:0004857
Apr10g0888 516 SUPERFAMILY Pectin lyase-like 202 513 IPR011050 -
Apr10g0888 516 PANTHER PECTINESTERASE 4 515 - -
Apr10g0888 516 ProSitePatterns Pectinesterase signature 1. 233 252 IPR018040 -
Apr10g0888 516 SMART PMEI_2 24 172 IPR006501 GO:0004857
Apr10g0888 516 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 175 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0888 Apr-Chr10 21412801 21414634 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0888 1 516 Carbohydrate Esterase AT2G45220 67.375 0.0 730
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0888 K01051 - gmx:100781697 920.228
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0888 10 21412801 21414634 Apr10g0888 10 21412801 21414634 ECH