Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0886 ATGACACCATTTCGCTTGCTAATAACACTTCTACTTGTTCCCTTTCTATTTTCTTCCATTGTCTCCGGCTACTCATTCAATGACATCAAATCATGGTGCAACCAAACCCCTTACCCCCAACCATGTGAGTACTATTTGACTAGCAATGCTTTCAACAAACCCATCAAAAACAAATCCGATTTCTTCAAAGTTTCTCTACAACTAGCCTTACAGAGAGCCCAAAAGGGCCAAGAAAACACTCACTCAGTAGGCCCAAAGTGCCGCAACGCCCATGAAACAGCCGCATGGACTGATTGCCTTGAACTCTATGAGTACACTATCCAAAGGCTCAACAAAACCATAGACACCAAGTGCACCCAAACCGAAGCTCAAACTTGGATAAGCACAGCTCTCACAAACCTTGAAACGTGCAAAGATGGGTTCTATGACCTTGGTGTCCCAAACTTTGTGTTATCCTTGTTGTCCAATAATGTAACTAAGTTACTAAGCAATACACTATCTCTCAACAAGGGTTCTTACCAACCACCAAGTTACAAAGATGGGTTCCCAACATGGGTCAAACCCGGTGACCGAAAGCTCTTGCAATCATCTTCAGCAGCTTCTAAGGCTAATGTGGTGGTGGCTAAAGATGGGTCTGGAAAGTACACAACGGTTAAGGCAGCCATAGATGCTGCACCAAAGAGTAGTAGCGGAAGGTATGTGATATATGTGAAAGCTGGGGTATACAATGAACAAGTTGAGATAAAAGCGACGAATATAATGTTAGTTGGTGATGGTATTGGAAAGACTATAATCACAGGTAGCAAAAGCGTTGGAGGGGGCTCCACAACCTTCCGTTCAGCCACTGTTGCTGCTGTTGGTGATGGATTTATTGCACAAGACATCACATTTAGGAACACTGCAGGGGCAGCAAATCACCAAGCTGTGGCACTACGTTCAGGGTCTGATCTCTCAGTATTTTATAGATGTGGCTTTGAGGGTTATCAAGACACACTATATGTTCATTCAGAGAGGCAATTTTATAGGGAATGTGACATTTATGGCACAGTAGATTTCATCTTTGGTAATGCTGCAGTGGTGTTGCAAAATTGCAACATTTATGCAAGACCCCCTCCACAAAAGACCATCACAGTCACTGCACAAGGAAGAACTGATCCAAACCAAAACACTGGAATCATCATTCACAATTCTAAGGTCACAGGTGCCTCAGGTTTCAACCCAAGTTCTGTTAAGTCATATCTTGGAAGGCCTTGGCAAAAGTACTCAAGAACAGTGTTCATGAAAACTTTTCTTGATAGCTTGATAAACCCTGCTGGCTGGATGGAATGGGATGGCAATTTTGCTTTGGACACTTTGTATTATGCTGAATATGCAAACACTGGTCCAGGTTCCTCCACTTCCAATAGAGTTAAATGGAAGGGTTACCATGTTCTCACTAGTGCTTCTCAAGCTTCACCTTTCACTGTTGGAAACTTCATTGCTGGTAACTCATGGATACCAAACACTGGCGTGCCTTTCACATCAGGGCTTTAA 1533 0.4312 MTPFRLLITLLLVPFLFSSIVSGYSFNDIKSWCNQTPYPQPCEYYLTSNAFNKPIKNKSDFFKVSLQLALQRAQKGQENTHSVGPKCRNAHETAAWTDCLELYEYTIQRLNKTIDTKCTQTEAQTWISTALTNLETCKDGFYDLGVPNFVLSLLSNNVTKLLSNTLSLNKGSYQPPSYKDGFPTWVKPGDRKLLQSSSAASKANVVVAKDGSGKYTTVKAAIDAAPKSSSGRYVIYVKAGVYNEQVEIKATNIMLVGDGIGKTIITGSKSVGGGSTTFRSATVAAVGDGFIAQDITFRNTAGAANHQAVALRSGSDLSVFYRCGFEGYQDTLYVHSERQFYRECDIYGTVDFIFGNAAVVLQNCNIYARPPPQKTITVTAQGRTDPNQNTGIIIHNSKVTGASGFNPSSVKSYLGRPWQKYSRTVFMKTFLDSLINPAGWMEWDGNFALDTLYYAEYANTGPGSSTSNRVKWKGYHVLTSASQASPFTVGNFIAGNSWIPNTGVPFTSGL* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0886 510 Pfam Plant invertase/pectin methylesterase inhibitor 28 168 IPR006501 GO:0004857
Apr10g0886 510 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 170 IPR035513 -
Apr10g0886 510 TIGRFAM PME_inhib: pectinesterase inhibitor domain 11 170 IPR006501 GO:0004857
Apr10g0886 510 ProSitePatterns Pectinesterase signature 2. 346 355 IPR033131 -
Apr10g0886 510 PANTHER PECTINESTERASE 4 509 - -
Apr10g0886 510 Gene3D - 198 510 IPR012334 -
Apr10g0886 510 SUPERFAMILY Pectin lyase-like 198 509 IPR011050 -
Apr10g0886 510 SMART PMEI_2 24 168 IPR006501 GO:0004857
Apr10g0886 510 ProSitePatterns Pectinesterase signature 1. 229 248 IPR018040 -
Apr10g0886 510 CDD PMEI-like_3 31 170 - -
Apr10g0886 510 PANTHER PECTINESTERASE 4 509 - -
Apr10g0886 510 Pfam Pectinesterase 204 496 IPR000070 GO:0030599|GO:0042545
Apr10g0886 510 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 171 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0886 Apr-Chr10 21383883 21387355 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0886 1 510 Carbohydrate Esterase AT2G45220 66.731 0.0 710
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0886 K01051 - gmx:100782892 910.598
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0886 10 21383883 21387355 Apr10g0886 10 21383883 21387355 ECH