Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0882 ATGTCCGCTTCATCCACTTCCTTTTCACCGGACCAACACCTCTCTCCCTCAGACCAGCTCTGCTATGTTCATTGCAATTTCTGTGACACTGTCCTCGCTGTGAGTGTTCCTTGCACCAGTTTGTTCAAGACTGTCACAGTGAGGTGTGGCCATTGCACCAACCTTCTCTCAGTCAACATGCGTGGACTACTTCTTCCTGCTGCTAATCAGCTTCACCTTGGCCATTCCTTCTTCACTCCTCAAAATCTTTTGGAGGAGATTCGAAATGCGCCTTCAACAAACATGATGATGAATCAGCTCCCTAACCCTAATGATTTGGTCATGAGCACCATGAGAGGAGGACCTGAAGAAACCCCTAAGCCACCATCAGCTAATAGACCTCCAGAGAAGAGACAGAGAGTGCCATCTGCTTACAACCGCTTCATCAAGGATGAGATCCAACGAATCAAAGCTGGGAATCCTGATATAAGCCACAGAGAGGCCTTTAGTGCAGCTGCAAAGAATTGGGCCCATTTTCCACACATTCATTTCGGACTTATGCCTGATCATCAACCCGTGAAGAAAGCTAATGAAGCAGAGGACGTGCTCATGAAAGATGGGTTTTTCGCACCGGCTAATGTAGGTGTCTCTCCCTACTAG 639 0.4773 MSASSTSFSPDQHLSPSDQLCYVHCNFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPAANQLHLGHSFFTPQNLLEEIRNAPSTNMMMNQLPNPNDLVMSTMRGGPEETPKPPSANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQPVKKANEAEDVLMKDGFFAPANVGVSPY* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0882 212 Gene3D High mobility group box domain 116 190 IPR036910 -
Apr10g0882 212 SUPERFAMILY HMG-box 120 173 IPR036910 -
Apr10g0882 212 MobiDBLite consensus disorder prediction 109 134 - -
Apr10g0882 212 PANTHER PROTEIN YABBY 6-RELATED 1 210 IPR006780 GO:0007275
Apr10g0882 212 Pfam YABBY protein 16 179 IPR006780 GO:0007275
Apr10g0882 212 PANTHER PROTEIN YABBY 4 1 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0882 Apr-Chr10 21336012 21339281 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0882 27 210 C2C2-YABBY Transcription Factor Family AT4G00180 62.679 5.04e-68 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Apr10g0882 YABBY 6.9e-74 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0882 K25796 - gmx:100781267 434.106