Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0866 ATGGAGAAGCACAAGTGCAAGCTTTGCTTTAGAAACTTCTCCAATGGAAGAGCTTTGGGGGGTCACATGAGGTCTCACATGATGAACCTACCCATTCCTCCAAAACCAAACGAGTTCGCAACGGTTCAACTCAGTTTCGAGACCGAGTCATCTCCATCTTCATCTTCCTTCGAACAAGACAAAAGCCTCTCTTATGGTCTGAGAGAGAACCCTAAACGAAGCTTTCGTATCGCAGATCCCGAGTTTTCGTTTCCTGCAGACGCAGCCTCTGCCTCTGTGATCCTCCAAGACAGAGAAAGCGAGACCGAGTCATCCAAGAAACCAACTCGGAAACGATCCCAGAGGCCGCGGAAACTCGGCGACACAACAAAAACAATGAACATCGCCAAACAGAACGAGTCGGCGAGTTCTGTTTCCGACACAACCACGGAGGAAGATGTCGCATTCTGTCTCATGATGTTGTCTCGTGATAAGTGGAGTGAAAATAATCATTATGAGGAGCAGGAGGAAGAGGAGGAGGAAGAAGAAGAACAAGAGGAGAAAGAAGAAGATAGCGATGAATCCGAGGAGCTGAAGTCTTGGAAGAAACCTAACAAAGTACGAGGAAGGTACAAATGTGAAACATGTGACAAGGTTTTTCGATCTTATCAAGCGTTAGGTGGACACAGAGCGAGTCACAAGAAGATCAAAGTGGTCGAAGCTGAAGTTGAAATGAAGGATGGAAAAAACGGTGAAGATTTTGCTGCTGTAGTTGTGGAGAAGAAAATCCATGAATGTCCGGTTTGTTTGAGAGTGTTTGGATCGGGTCAAGCTCTCGGTGGACATAAGAGAACCCATGTTATTGGTTCTGCAACCGTAACTGCAACGCCAATCGCAACCACAACTAATTCAGTTAGAACTTCCACGAAGTTCGGAGACAGTTTGATAGATCTAAATCTCCCTGCTCCTGCTGATGATGATGATGATGTTAGCCAGTTCGATGTCTCCGCCGTTTCAGATGCAGAGTTTGTCAAATTGCATTAG 1023 0.4594 MEKHKCKLCFRNFSNGRALGGHMRSHMMNLPIPPKPNEFATVQLSFETESSPSSSSFEQDKSLSYGLRENPKRSFRIADPEFSFPADAASASVILQDRESETESSKKPTRKRSQRPRKLGDTTKTMNIAKQNESASSVSDTTTEEDVAFCLMMLSRDKWSENNHYEEQEEEEEEEEEQEEKEEDSDESEELKSWKKPNKVRGRYKCETCDKVFRSYQALGGHRASHKKIKVVEAEVEMKDGKNGEDFAAVVVEKKIHECPVCLRVFGSGQALGGHKRTHVIGSATVTATPIATTTNSVRTSTKFGDSLIDLNLPAPADDDDDVSQFDVSAVSDAEFVKLH* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0866 340 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Apr10g0866 340 MobiDBLite consensus disorder prediction 47 70 - -
Apr10g0866 340 Gene3D Classic Zinc Finger 201 279 - -
Apr10g0866 340 MobiDBLite consensus disorder prediction 99 119 - -
Apr10g0866 340 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 339 IPR044303 GO:0006355
Apr10g0866 340 ProSitePatterns Zinc finger C2H2 type domain signature. 206 226 IPR013087 -
Apr10g0866 340 ProSiteProfiles Zinc finger C2H2 type domain profile. 257 279 IPR013087 -
Apr10g0866 340 ProSiteProfiles Zinc finger C2H2 type domain profile. 204 231 IPR013087 -
Apr10g0866 340 PANTHER CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR 1 339 - -
Apr10g0866 340 MobiDBLite consensus disorder prediction 47 63 - -
Apr10g0866 340 MobiDBLite consensus disorder prediction 160 194 - -
Apr10g0866 340 ProSitePatterns Zinc finger C2H2 type domain signature. 259 279 IPR013087 -
Apr10g0866 340 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Apr10g0866 340 MobiDBLite consensus disorder prediction 93 143 - -
Apr10g0866 340 MobiDBLite consensus disorder prediction 166 187 - -
Apr10g0866 340 SUPERFAMILY beta-beta-alpha zinc fingers 3 31 IPR036236 -
Apr10g0866 340 Pfam C2H2-type zinc finger 4 27 - -
Apr10g0866 340 Pfam C2H2-type zinc finger 203 228 - -
Apr10g0866 340 Pfam C2H2-type zinc finger 257 279 - -
Apr10g0866 340 SMART c2h2final6 4 26 IPR013087 -
Apr10g0866 340 SMART c2h2final6 257 279 IPR013087 -
Apr10g0866 340 SMART c2h2final6 204 226 IPR013087 -
Apr10g0866 340 MobiDBLite consensus disorder prediction 120 143 - -
Apr10g0866 340 Coils Coil 158 191 - -
Apr10g0866 340 SUPERFAMILY beta-beta-alpha zinc fingers 203 279 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0866 Apr-Chr10 21036987 21038272 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0866 1 321 C2H2 Transcription Factor Family AT3G60580 45.373 7.89e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr10g0866 zf-C2H2_6 6.3e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0866 - - aprc:113850450 590.497