Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0865 ATGGCTTTGATTGTGGATCAACAATCAAACTTCAAGCATTTTTGTAAAATTTGCAAGAAAGGTTTTGGTTGTGGAAGAGCTTTAGGAGGACACATGAGGGCACATGGCATAGGAGATGAAAGTGGTCACATGGATGACGATGATCAAGCAAGTGATTGGGAAGATAGGCTTGGTGGAAATGTGCCACCGAGCAACAAACGCATGTATGCTCTAAGAACAAATCCTAATAGGCTAAAGAGCTGTAGGGTATGTGAGAATTGTGGCAAAGAGTTCTTATCATGGAAATCTTTTCTTGAACATGGAAAGTGCACCTCAGAAGATGCTGAGTCCCTTGTCTCCTCTCCAGGCTCTGATGCTGATGATGGTGGCGTTGGTGCTCGTAGAGGATGTGGTTGGTCCAAAAGGAAAAGGTCTTTGAGAACAAAGGTTGGTAGCTTCAATTACAATTGCCCATCAAGCGAAGAAGAAGACCTTGCAAATTGTTTAATGATGTTATCGAATGCCATTGTAGATCCTCTTGTGGCTGAACCTGAAGAATCTTCTGCCTCAGCTAGCAAAGAGGAAGAAAGAAGAAATCCCATGAATTTCATTTCACCATTGTCATGCAAAGTTAATAACAACAATAACAACAACAACCTCATTGATAACAAGGCCAAAGGGGTTGCCAAGGGCTTGTTTGAATGCAAAGCATGCAAGAAAGTTTTCAATTCCCACCAAGCATTGGGTGGCCATAGAGCAAGTCACAAAAAGGTTAAAGGTTGTTTTGCTGCAAGACTAGACAACCTTGATGACAATCTCACCGAGGATGATGTCATTGCACATGAAGAATTCTTCCCTACAAAATCAAACTCCGCCCTCCAATTTGACCACGGCTCTAACCCCACATTAGCCTCTTCCTCTAAGAGAAAATCCAAAGTTCATGAATGCTCCATTTGTCATAGGAGCTTCTCTTCAGGACAAGCATTGGGGGGTCACAAAAGGTGCCATTGGATCACTTCAAATGCTCCTGACACATCCACATTAACAAGATTTCAACAATTCCAAGATCACATGGATCAAATACCAAAGTTTGATACCTCTTCTGAGCCACTTGATCTCAAGTTAGACCTTAACCTTCCTGCACCCACTAATGACCTTTCAAGAAGGAACGTGTCTACGGAAATTTACTTGCAACCATGGCTTGCAACAAAGGATCTTAAAGATGATAACAATAGTCAGTGTCAGAGTCTTCACAACCATAATAACAATGTTGATAATGACAACGATGAAGACAAGAATAATAATAATAACTCAATGCAAAACGTGGATAATGAAGCTGATAGTAAGATCAAGTTGGCGAAACTTAGTGAGCTTAAGGACATGAACATTGCTGGTAGTTCTTCGCCATGGTTGCAGGTTGGAATTGGTTCAACCACTGATGTGGCCACTGATCACTGCTGA 1440 0.416 MALIVDQQSNFKHFCKICKKGFGCGRALGGHMRAHGIGDESGHMDDDDQASDWEDRLGGNVPPSNKRMYALRTNPNRLKSCRVCENCGKEFLSWKSFLEHGKCTSEDAESLVSSPGSDADDGGVGARRGCGWSKRKRSLRTKVGSFNYNCPSSEEEDLANCLMMLSNAIVDPLVAEPEESSASASKEEERRNPMNFISPLSCKVNNNNNNNNLIDNKAKGVAKGLFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDNLDDNLTEDDVIAHEEFFPTKSNSALQFDHGSNPTLASSSKRKSKVHECSICHRSFSSGQALGGHKRCHWITSNAPDTSTLTRFQQFQDHMDQIPKFDTSSEPLDLKLDLNLPAPTNDLSRRNVSTEIYLQPWLATKDLKDDNNSQCQSLHNHNNNVDNDNDEDKNNNNNSMQNVDNEADSKIKLAKLSELKDMNIAGSSSPWLQVGIGSTTDVATDHC* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0865 479 ProSitePatterns Zinc finger C2H2 type domain signature. 228 248 IPR013087 -
Apr10g0865 479 SUPERFAMILY beta-beta-alpha zinc fingers 13 101 IPR036236 -
Apr10g0865 479 Pfam C2H2-type zinc finger 226 250 - -
Apr10g0865 479 Pfam C2H2-type zinc finger 306 331 - -
Apr10g0865 479 Pfam C2H2-type zinc finger 13 35 - -
Apr10g0865 479 Gene3D Classic Zinc Finger 11 103 - -
Apr10g0865 479 Gene3D Classic Zinc Finger 224 329 - -
Apr10g0865 479 ProSiteProfiles Zinc finger C2H2 type domain profile. 307 329 IPR013087 -
Apr10g0865 479 SMART c2h2final6 307 329 IPR013087 -
Apr10g0865 479 SMART c2h2final6 226 248 IPR013087 -
Apr10g0865 479 SMART c2h2final6 13 35 IPR013087 -
Apr10g0865 479 SUPERFAMILY beta-beta-alpha zinc fingers 225 329 IPR036236 -
Apr10g0865 479 MobiDBLite consensus disorder prediction 38 54 - -
Apr10g0865 479 MobiDBLite consensus disorder prediction 38 59 - -
Apr10g0865 479 MobiDBLite consensus disorder prediction 401 415 - -
Apr10g0865 479 ProSiteProfiles Zinc finger C2H2 type domain profile. 226 253 IPR013087 -
Apr10g0865 479 PANTHER OS02G0659100 PROTEIN 1 477 - -
Apr10g0865 479 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Apr10g0865 479 MobiDBLite consensus disorder prediction 401 438 - -
Apr10g0865 479 PANTHER OS02G0659100 PROTEIN 1 477 - -
Apr10g0865 479 ProSitePatterns Zinc finger C2H2 type domain signature. 309 329 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0865 Apr-Chr10 21011486 21012925 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0865 134 372 C2H2 Transcription Factor Family AT1G02040 35.656 1.43e-32 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr10g0865 zf-C2H2_6 1.6e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0865 - - gmx:100793846 813.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0865 10 21011486 21012925 Apr10g0865 10 21011486 21012925 ECH