Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0862 ATGAGCCAGTGTGTGCCTAGCTGTGATGCCGACGACAATATTCCCATCGCCACAAAACTCCCTCTTCTTCCCAACTCCAATACCATTGCCTTTCAAGTCCCCATGTTCGACTACACATGCAGAAAGGGACAACTTTCGAAGCTCCTTAACGAAGACAGCACTGGAAACTTTAACACATGGGACAAGTCTATTGCAAATGATACTTTAGCGTCCACAGTTCAATGTGTCGGCGAAAACAAGCATGAAAGTCAGTTAATTTCATGGCCTAACCCTCGCCAAATTGCGATAACTGTGGACGCTTTAGTGCCATGTTCCTCGGAACAGGGCATGCCGCAGGTTGTAGAGTCAGGAACGCTTGGCGCGTGCGTGGGACGTTCCTCTGAGACTGTGAGGCGGGAGTTAAGTGGCTGCGGAGATTGGAGTGCGAGTGGTAGTGCCACTTGTTGCAAGGACGTGACTGTGGGTTTCAATTCTGCCTCCATGGGTTCGCCGGAAAACACCACCGGCTCCGCCAAGCACTGCACCGGGACCACCACCAACGACGACCACGATTCCATTCGCCACCGTGGATCACAGAGTGAGGCAGGGGATGGGGATTACAAGGCAACAAGAATTGATAGATCTTTGGGGTCCAATAAAAGAAGCAAAGCTCAAGCTGTACACAAACAATCTGAAAGGAGGCGGAGAGATAAGATCAACCAAAGATTGAAAACATTGCAAAAGCTGGTCCCATATTCCAGTAAGACCGATAAAGCTTCGATGCTGGATGAGGTGATCCAATATTTGAAGCAATTGCAAGCTCAAGTGCAAACGATGAATTGGATGAAAATGTACTCTTCCATGATGCTGCCAATTACCATGCAACAACAACTTCAAATGTCTATGATGGCTCGTATGGGCATTGGAATGGGGAAGAATATGGGTATGGGTATGGGTATAGGCATGGGCATGGATATGAACATTCCCAGTTTCTCTCCTGTATTTCACCCTAGTCCCTTCATGCCTATGGCCTCATGGAGTGCTTGCGGTGGCGATCAATTTCCAGGAGCACAATCAAAGCCCGTGACAGTGGATGCATTCAGTAGGATGGCTGCTCTGTATCAACAGCTATATCATCCTCCGTCCGCTTCTACTTCTAAGAGTTGA 1146 0.4843 MSQCVPSCDADDNIPIATKLPLLPNSNTIAFQVPMFDYTCRKGQLSKLLNEDSTGNFNTWDKSIANDTLASTVQCVGENKHESQLISWPNPRQIAITVDALVPCSSEQGMPQVVESGTLGACVGRSSETVRRELSGCGDWSASGSATCCKDVTVGFNSASMGSPENTTGSAKHCTGTTTNDDHDSIRHRGSQSEAGDGDYKATRIDRSLGSNKRSKAQAVHKQSERRRRDKINQRLKTLQKLVPYSSKTDKASMLDEVIQYLKQLQAQVQTMNWMKMYSSMMLPITMQQQLQMSMMARMGIGMGKNMGMGMGIGMGMDMNIPSFSPVFHPSPFMPMASWSACGGDQFPGAQSKPVTVDAFSRMAALYQQLYHPPSASTSKS* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0862 381 Coils Coil 222 242 - -
Apr10g0862 381 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 37 378 IPR031066 -
Apr10g0862 381 MobiDBLite consensus disorder prediction 159 231 - -
Apr10g0862 381 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 216 265 IPR011598 GO:0046983
Apr10g0862 381 MobiDBLite consensus disorder prediction 177 211 - -
Apr10g0862 381 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 213 283 IPR036638 GO:0046983
Apr10g0862 381 MobiDBLite consensus disorder prediction 159 176 - -
Apr10g0862 381 CDD bHLH_AtPIF_like 216 278 - -
Apr10g0862 381 PANTHER TRANSCRIPTION FACTOR UNE10-LIKE 37 378 - -
Apr10g0862 381 Pfam Helix-loop-helix DNA-binding domain 219 266 IPR011598 GO:0046983
Apr10g0862 381 SMART finulus 222 271 IPR011598 GO:0046983
Apr10g0862 381 Gene3D - 211 277 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0862 Apr-Chr10 20968043 20975186 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0862 1 279 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 43.243 2.06e-46 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr10g0862 HLH 1.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0862 - - gmx:100788617 370.163