Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr10g0860 | ATGCATTCTGGATATCACTTCACTCTGATGATGCAAGTGCAATTCATATTATCACTATGTCTTGTTCTTTTTGGTCCACTCCTTGTGATCTCAATAGACTCAGCTTTCAATGATGATGTTTTGGGGTTGATTGTGTTCAAGGCTGGTCTAGAAGATCCAAGAGGTAAACTCTCTACATGGAATGAAGATGATTATAGTCCTTGCAATTGGGTTGGTGTCAAATGTGACCCTGCAACCAATAGGGTATTTGCACTTTTTCTTGATGGATTTTCTCTTTCTGGGCACATTGATAGAGGTATTTTCAGATTGCAGTTCCTTCAAATTCTCTCACTTTCTAGGAATAACTTCACCGGGACTATAAAACCAGATCTTCTTAGCCTTGGGAATTTACAAATTGTTGATTTGAGTGAGAACAACCTCTCAGGGTCAATCCCAGATGGGTTTTTCCAGCAATGTTGGTCTCTAAGAGTGGTGTCATTTGCCAACAACAACATTACAGGTAAGATTCCTGATTCTTTGAGATCCTGCTACTCATTGGTAGCTGTGAACTTTTCATCTAATCATCTAAATGGGCAATTACCATCCTGGATGTGGTATTTGAGGGGACTACAATCAATTGATCTGTCTAATAATTTTCTAGAGGGAGAGATTCCTGAAGGAATTCAGAATCTATATGATTTGAGGGAGTTAAAGCTTGGGAAGAACCATTTTACTGGAATGCTCCCTGAGGATATTGGAGAGTGTTTGCTTTTGAAATTGATTGATTTCAGTGGTAATTTTCTCTCTGGGAGACTTCCTGAGTCAATACAAAAACTCACCTCATGCACATTCCTCAGTTTGCAAGGGAATTCATTTACAGGAGGCATTCCATATTGGATTGGAGAATTGAAAAGTCTAGAGATATTGGATCTTTCAGCAAATAAATTCTCTGGTTGGATTCCAAAATCAATGGGAAATCTTGAGTCTCTGAGTAGATTAAATCTGTCAAGGAATCAGATCACAGGAAACCTGCCAGAGGTAATGGTAAGCTGCATTAAGCTTTTGGCTCTTGACATCAGCCACAATCACTTGGTAGGCCATCTTCCCTCATGGATATTTAGAATGGGTTTACAAAGTATCTCACTTTCGGGGACTGGCTTCAGCAGGAGCAGTTATCCTTCACTTACTCCAATTCCTGTATCTTTTCATGGCCTTCAGGTTTTGGATTTGTCTTCAAATGCACTTTCTGGTGAACTTCCATCCATAATTGGTGGTCTTAGTAGCTTGCAGGTATTAAATTTGGCCACCAACAATATCTCTGGTTCTATTCCTGTGAGTATAGGGGAACTTAAATCTTTGTACATTCTTGACTTAAGTGACAACAAGCTTAATGGAAGCATTCCTTCTGAAATAGAAGGTGCAGTTTCACTCAGTGAAATGAGGCTTCAAAAGAACTTCTTAGGTGGGAGAATTCCAGCCCAAATTGTGAATTGTTCAGCACTAACATTTCTGAATCTTTCTCACAACAGGCTTATTGGTTCAATCCCTGCAGCCGTTACAAACCTAACAAATCTAAAGTATGTAGATTTGTCATGGAATCAACTATCAGGAAGCTTACCAAAGGAGTTGACAAATCTTTCCCAGCTTTTCTCATTTGATGTCTCATACAACCACCTTCAAGGTGAGTTACCAGAGGGTGGCTTCTTCAACATCATCTCTCCTTCATCACTTTCTGGTAATCCATTGTTATGTGGTTCTGTTGTTAATCACTCTTGCCCTTCTGTTCATCCAAAGCCTATAGTCCTAAATCCCAATTCTTCTTACTCAAACTCAGGCTCTTCCTTACAAAACCATCATCATAAGATGATGCTTAGTATATCTGTCCTTATTGCTATTGCTGGTGCTATTTTTATTGTCATTGGTGTGGTGGCTGTTACTGTCCTAAATATTCATGTGAGGTCTTCAATTTCACATTCTGCTGCTCCATTTGTATTCTCTGGTGGTGAGGACTATAGTTGTTCGCCCGCGAATGATCCAAACAATGGCAATCTTGTAATGTTTTCTGGAGATGCTGAATTTGCTGAAGGTGCTCATAATCTTCTCAACAAAGACAACGAAATTGGCCGCGGTGGATTTGGAGTTGTTTATTGCACTGTCCTTAGAGATGGCCATTCTGTTGCAATAAAAAAACTTACAATGTCAACTTTGACCAAATCTAAAGAAGACTTTGAGAGAGAGGTTCAAGTTCTTGGGAAGATCAAGCATCAAAATCTTGTGGCACTTGAGGGCTATTACTGGACTCCATCCTTGCACCTCCTAATTTACGAGTACCTAGCTAGAGGGAGTTTGCACAAGCTTCTACATGATGACAATAGCAAAAATGTCCTTTCTTGGAGACGAAGGTTCAAGATTATTCTTGGAATGGCAAAAGGGTTGGCCTATTTGCATCAAATGGACATAATTCATTATAATCTTAAGTCTATCAATGTTTTCATTGATTGTTCTGATGAGCCAAAAATAGGAGACTTTGGCTTGGTGAGGCTATTGCCAATGTTAGACCATTGTGTTTTGAGCAGCAAAATTCAAAGTGCACTTGGATACATGGCTCCTGAATTTGCTTGCCGCACTGTTAAGATAACTGAAAAATGTGACATATATAGTTTTGGAATTTTGATTTTGGAGGTGGTGACAGGAAAAAGACCTGTGGAATATATGGAGGATGATGTGGTTGTTCTATGTGACAAGGTAAGGGGTGCATTGGATGATGGCAAAGTGGAGCAATGTGTTGATAAGAAACTTATGGGAAATTTTGCTTCAGAGGAAGCAATTCCTGTGATCAAATTGGGTTTAGTTTGTGCATCTCAAGTACCCTCAAATCGTCCAGATATGGTTGAGGTAGTTAACATATTAGAGTTGATCCAATGCTCTTCAGAAGGACAAGGGGATTTATAA | 2931 | 0.3937 | MHSGYHFTLMMQVQFILSLCLVLFGPLLVISIDSAFNDDVLGLIVFKAGLEDPRGKLSTWNEDDYSPCNWVGVKCDPATNRVFALFLDGFSLSGHIDRGIFRLQFLQILSLSRNNFTGTIKPDLLSLGNLQIVDLSENNLSGSIPDGFFQQCWSLRVVSFANNNITGKIPDSLRSCYSLVAVNFSSNHLNGQLPSWMWYLRGLQSIDLSNNFLEGEIPEGIQNLYDLRELKLGKNHFTGMLPEDIGECLLLKLIDFSGNFLSGRLPESIQKLTSCTFLSLQGNSFTGGIPYWIGELKSLEILDLSANKFSGWIPKSMGNLESLSRLNLSRNQITGNLPEVMVSCIKLLALDISHNHLVGHLPSWIFRMGLQSISLSGTGFSRSSYPSLTPIPVSFHGLQVLDLSSNALSGELPSIIGGLSSLQVLNLATNNISGSIPVSIGELKSLYILDLSDNKLNGSIPSEIEGAVSLSEMRLQKNFLGGRIPAQIVNCSALTFLNLSHNRLIGSIPAAVTNLTNLKYVDLSWNQLSGSLPKELTNLSQLFSFDVSYNHLQGELPEGGFFNIISPSSLSGNPLLCGSVVNHSCPSVHPKPIVLNPNSSYSNSGSSLQNHHHKMMLSISVLIAIAGAIFIVIGVVAVTVLNIHVRSSISHSAAPFVFSGGEDYSCSPANDPNNGNLVMFSGDAEFAEGAHNLLNKDNEIGRGGFGVVYCTVLRDGHSVAIKKLTMSTLTKSKEDFEREVQVLGKIKHQNLVALEGYYWTPSLHLLIYEYLARGSLHKLLHDDNSKNVLSWRRRFKIILGMAKGLAYLHQMDIIHYNLKSINVFIDCSDEPKIGDFGLVRLLPMLDHCVLSSKIQSALGYMAPEFACRTVKITEKCDIYSFGILILEVVTGKRPVEYMEDDVVVLCDKVRGALDDGKVEQCVDKKLMGNFASEEAIPVIKLGLVCASQVPSNRPDMVEVVNILELIQCSSEGQGDL* | 977 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr10g0860 | 976 | SMART | LRR_typ_2 | 224 | 248 | IPR003591 | - | |
Apr10g0860 | 976 | SMART | LRR_typ_2 | 443 | 467 | IPR003591 | - | |
Apr10g0860 | 976 | SMART | LRR_typ_2 | 419 | 441 | IPR003591 | - | |
Apr10g0860 | 976 | SMART | LRR_typ_2 | 296 | 319 | IPR003591 | - | |
Apr10g0860 | 976 | SMART | LRR_typ_2 | 395 | 418 | IPR003591 | - | |
Apr10g0860 | 976 | SMART | LRR_typ_2 | 127 | 151 | IPR003591 | - | |
Apr10g0860 | 976 | SMART | LRR_typ_2 | 539 | 563 | IPR003591 | - | |
Apr10g0860 | 976 | SMART | LRR_typ_2 | 320 | 344 | IPR003591 | - | |
Apr10g0860 | 976 | SMART | LRR_typ_2 | 515 | 538 | IPR003591 | - | |
Apr10g0860 | 976 | SMART | LRR_typ_2 | 200 | 223 | IPR003591 | - | |
Apr10g0860 | 976 | PRINTS | Leucine-rich repeat signature | 398 | 411 | - | - | |
Apr10g0860 | 976 | PRINTS | Leucine-rich repeat signature | 443 | 456 | - | - | |
Apr10g0860 | 976 | SUPERFAMILY | L domain-like | 59 | 315 | - | - | |
Apr10g0860 | 976 | Pfam | Leucine rich repeat | 292 | 333 | IPR001611 | GO:0005515 | |
Apr10g0860 | 976 | Pfam | Leucine rich repeat | 493 | 552 | IPR001611 | GO:0005515 | |
Apr10g0860 | 976 | Pfam | Leucine rich repeat | 129 | 189 | IPR001611 | GO:0005515 | |
Apr10g0860 | 976 | Pfam | Leucine rich repeat | 397 | 456 | IPR001611 | GO:0005515 | |
Apr10g0860 | 976 | Gene3D | Ribonuclease Inhibitor | 316 | 591 | IPR032675 | - | |
Apr10g0860 | 976 | SMART | LRR_sd22_2 | 200 | 223 | - | - | |
Apr10g0860 | 976 | SMART | LRR_sd22_2 | 296 | 322 | - | - | |
Apr10g0860 | 976 | SMART | LRR_sd22_2 | 515 | 541 | - | - | |
Apr10g0860 | 976 | SMART | LRR_sd22_2 | 443 | 466 | - | - | |
Apr10g0860 | 976 | SMART | LRR_sd22_2 | 395 | 421 | - | - | |
Apr10g0860 | 976 | Gene3D | Transferase(Phosphotransferase) domain 1 | 771 | 974 | - | - | |
Apr10g0860 | 976 | ProSiteProfiles | Protein kinase domain profile. | 694 | 966 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Apr10g0860 | 976 | Pfam | Leucine rich repeat N-terminal domain | 37 | 76 | IPR013210 | - | |
Apr10g0860 | 976 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED | 10 | 967 | - | - | |
Apr10g0860 | 976 | ProSitePatterns | Protein kinases ATP-binding region signature. | 700 | 723 | IPR017441 | GO:0005524 | |
Apr10g0860 | 976 | SUPERFAMILY | Protein kinase-like (PK-like) | 693 | 966 | IPR011009 | - | |
Apr10g0860 | 976 | Pfam | Protein kinase domain | 695 | 960 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Apr10g0860 | 976 | CDD | STKc_IRAK | 700 | 966 | - | - | |
Apr10g0860 | 976 | Gene3D | Ribonuclease Inhibitor | 36 | 315 | IPR032675 | - | |
Apr10g0860 | 976 | Pfam | Leucine Rich Repeat | 203 | 224 | IPR001611 | GO:0005515 | |
Apr10g0860 | 976 | Pfam | Leucine Rich Repeat | 251 | 272 | IPR001611 | GO:0005515 | |
Apr10g0860 | 976 | PANTHER | LEUCINE-RICH RECEPTOR-LIKE KINASE FAMILY PROTEIN | 10 | 967 | - | - | |
Apr10g0860 | 976 | Gene3D | Phosphorylase Kinase; domain 1 | 676 | 770 | - | - | |
Apr10g0860 | 976 | SUPERFAMILY | RNI-like | 254 | 562 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr10g0860 | Apr-Chr10 | 20950128 | 20953288 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Apr10g0860 | 21 | 970 | Receptor kinase-like Gene Family | AT5G01890 | 59.310 | 0.0 | 1093 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-VII-1 | Apr10g0860 | Pkinase | 8.9e-43 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr10g0860 | - | - | gmx:100791204 | 1646.33 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Apr10g0860 | 10 | 20950128 | 20953288 | Apr10g0860 | 10 | 20950128 | 20953288 | ECH | |
Apr4g2141 | 4 | 30509282 | 30512537 | Apr10g0860 | 10 | 20950128 | 20953288 | PCT |