Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0860 ATGCATTCTGGATATCACTTCACTCTGATGATGCAAGTGCAATTCATATTATCACTATGTCTTGTTCTTTTTGGTCCACTCCTTGTGATCTCAATAGACTCAGCTTTCAATGATGATGTTTTGGGGTTGATTGTGTTCAAGGCTGGTCTAGAAGATCCAAGAGGTAAACTCTCTACATGGAATGAAGATGATTATAGTCCTTGCAATTGGGTTGGTGTCAAATGTGACCCTGCAACCAATAGGGTATTTGCACTTTTTCTTGATGGATTTTCTCTTTCTGGGCACATTGATAGAGGTATTTTCAGATTGCAGTTCCTTCAAATTCTCTCACTTTCTAGGAATAACTTCACCGGGACTATAAAACCAGATCTTCTTAGCCTTGGGAATTTACAAATTGTTGATTTGAGTGAGAACAACCTCTCAGGGTCAATCCCAGATGGGTTTTTCCAGCAATGTTGGTCTCTAAGAGTGGTGTCATTTGCCAACAACAACATTACAGGTAAGATTCCTGATTCTTTGAGATCCTGCTACTCATTGGTAGCTGTGAACTTTTCATCTAATCATCTAAATGGGCAATTACCATCCTGGATGTGGTATTTGAGGGGACTACAATCAATTGATCTGTCTAATAATTTTCTAGAGGGAGAGATTCCTGAAGGAATTCAGAATCTATATGATTTGAGGGAGTTAAAGCTTGGGAAGAACCATTTTACTGGAATGCTCCCTGAGGATATTGGAGAGTGTTTGCTTTTGAAATTGATTGATTTCAGTGGTAATTTTCTCTCTGGGAGACTTCCTGAGTCAATACAAAAACTCACCTCATGCACATTCCTCAGTTTGCAAGGGAATTCATTTACAGGAGGCATTCCATATTGGATTGGAGAATTGAAAAGTCTAGAGATATTGGATCTTTCAGCAAATAAATTCTCTGGTTGGATTCCAAAATCAATGGGAAATCTTGAGTCTCTGAGTAGATTAAATCTGTCAAGGAATCAGATCACAGGAAACCTGCCAGAGGTAATGGTAAGCTGCATTAAGCTTTTGGCTCTTGACATCAGCCACAATCACTTGGTAGGCCATCTTCCCTCATGGATATTTAGAATGGGTTTACAAAGTATCTCACTTTCGGGGACTGGCTTCAGCAGGAGCAGTTATCCTTCACTTACTCCAATTCCTGTATCTTTTCATGGCCTTCAGGTTTTGGATTTGTCTTCAAATGCACTTTCTGGTGAACTTCCATCCATAATTGGTGGTCTTAGTAGCTTGCAGGTATTAAATTTGGCCACCAACAATATCTCTGGTTCTATTCCTGTGAGTATAGGGGAACTTAAATCTTTGTACATTCTTGACTTAAGTGACAACAAGCTTAATGGAAGCATTCCTTCTGAAATAGAAGGTGCAGTTTCACTCAGTGAAATGAGGCTTCAAAAGAACTTCTTAGGTGGGAGAATTCCAGCCCAAATTGTGAATTGTTCAGCACTAACATTTCTGAATCTTTCTCACAACAGGCTTATTGGTTCAATCCCTGCAGCCGTTACAAACCTAACAAATCTAAAGTATGTAGATTTGTCATGGAATCAACTATCAGGAAGCTTACCAAAGGAGTTGACAAATCTTTCCCAGCTTTTCTCATTTGATGTCTCATACAACCACCTTCAAGGTGAGTTACCAGAGGGTGGCTTCTTCAACATCATCTCTCCTTCATCACTTTCTGGTAATCCATTGTTATGTGGTTCTGTTGTTAATCACTCTTGCCCTTCTGTTCATCCAAAGCCTATAGTCCTAAATCCCAATTCTTCTTACTCAAACTCAGGCTCTTCCTTACAAAACCATCATCATAAGATGATGCTTAGTATATCTGTCCTTATTGCTATTGCTGGTGCTATTTTTATTGTCATTGGTGTGGTGGCTGTTACTGTCCTAAATATTCATGTGAGGTCTTCAATTTCACATTCTGCTGCTCCATTTGTATTCTCTGGTGGTGAGGACTATAGTTGTTCGCCCGCGAATGATCCAAACAATGGCAATCTTGTAATGTTTTCTGGAGATGCTGAATTTGCTGAAGGTGCTCATAATCTTCTCAACAAAGACAACGAAATTGGCCGCGGTGGATTTGGAGTTGTTTATTGCACTGTCCTTAGAGATGGCCATTCTGTTGCAATAAAAAAACTTACAATGTCAACTTTGACCAAATCTAAAGAAGACTTTGAGAGAGAGGTTCAAGTTCTTGGGAAGATCAAGCATCAAAATCTTGTGGCACTTGAGGGCTATTACTGGACTCCATCCTTGCACCTCCTAATTTACGAGTACCTAGCTAGAGGGAGTTTGCACAAGCTTCTACATGATGACAATAGCAAAAATGTCCTTTCTTGGAGACGAAGGTTCAAGATTATTCTTGGAATGGCAAAAGGGTTGGCCTATTTGCATCAAATGGACATAATTCATTATAATCTTAAGTCTATCAATGTTTTCATTGATTGTTCTGATGAGCCAAAAATAGGAGACTTTGGCTTGGTGAGGCTATTGCCAATGTTAGACCATTGTGTTTTGAGCAGCAAAATTCAAAGTGCACTTGGATACATGGCTCCTGAATTTGCTTGCCGCACTGTTAAGATAACTGAAAAATGTGACATATATAGTTTTGGAATTTTGATTTTGGAGGTGGTGACAGGAAAAAGACCTGTGGAATATATGGAGGATGATGTGGTTGTTCTATGTGACAAGGTAAGGGGTGCATTGGATGATGGCAAAGTGGAGCAATGTGTTGATAAGAAACTTATGGGAAATTTTGCTTCAGAGGAAGCAATTCCTGTGATCAAATTGGGTTTAGTTTGTGCATCTCAAGTACCCTCAAATCGTCCAGATATGGTTGAGGTAGTTAACATATTAGAGTTGATCCAATGCTCTTCAGAAGGACAAGGGGATTTATAA 2931 0.3937 MHSGYHFTLMMQVQFILSLCLVLFGPLLVISIDSAFNDDVLGLIVFKAGLEDPRGKLSTWNEDDYSPCNWVGVKCDPATNRVFALFLDGFSLSGHIDRGIFRLQFLQILSLSRNNFTGTIKPDLLSLGNLQIVDLSENNLSGSIPDGFFQQCWSLRVVSFANNNITGKIPDSLRSCYSLVAVNFSSNHLNGQLPSWMWYLRGLQSIDLSNNFLEGEIPEGIQNLYDLRELKLGKNHFTGMLPEDIGECLLLKLIDFSGNFLSGRLPESIQKLTSCTFLSLQGNSFTGGIPYWIGELKSLEILDLSANKFSGWIPKSMGNLESLSRLNLSRNQITGNLPEVMVSCIKLLALDISHNHLVGHLPSWIFRMGLQSISLSGTGFSRSSYPSLTPIPVSFHGLQVLDLSSNALSGELPSIIGGLSSLQVLNLATNNISGSIPVSIGELKSLYILDLSDNKLNGSIPSEIEGAVSLSEMRLQKNFLGGRIPAQIVNCSALTFLNLSHNRLIGSIPAAVTNLTNLKYVDLSWNQLSGSLPKELTNLSQLFSFDVSYNHLQGELPEGGFFNIISPSSLSGNPLLCGSVVNHSCPSVHPKPIVLNPNSSYSNSGSSLQNHHHKMMLSISVLIAIAGAIFIVIGVVAVTVLNIHVRSSISHSAAPFVFSGGEDYSCSPANDPNNGNLVMFSGDAEFAEGAHNLLNKDNEIGRGGFGVVYCTVLRDGHSVAIKKLTMSTLTKSKEDFEREVQVLGKIKHQNLVALEGYYWTPSLHLLIYEYLARGSLHKLLHDDNSKNVLSWRRRFKIILGMAKGLAYLHQMDIIHYNLKSINVFIDCSDEPKIGDFGLVRLLPMLDHCVLSSKIQSALGYMAPEFACRTVKITEKCDIYSFGILILEVVTGKRPVEYMEDDVVVLCDKVRGALDDGKVEQCVDKKLMGNFASEEAIPVIKLGLVCASQVPSNRPDMVEVVNILELIQCSSEGQGDL* 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0860 976 SMART LRR_typ_2 224 248 IPR003591 -
Apr10g0860 976 SMART LRR_typ_2 443 467 IPR003591 -
Apr10g0860 976 SMART LRR_typ_2 419 441 IPR003591 -
Apr10g0860 976 SMART LRR_typ_2 296 319 IPR003591 -
Apr10g0860 976 SMART LRR_typ_2 395 418 IPR003591 -
Apr10g0860 976 SMART LRR_typ_2 127 151 IPR003591 -
Apr10g0860 976 SMART LRR_typ_2 539 563 IPR003591 -
Apr10g0860 976 SMART LRR_typ_2 320 344 IPR003591 -
Apr10g0860 976 SMART LRR_typ_2 515 538 IPR003591 -
Apr10g0860 976 SMART LRR_typ_2 200 223 IPR003591 -
Apr10g0860 976 PRINTS Leucine-rich repeat signature 398 411 - -
Apr10g0860 976 PRINTS Leucine-rich repeat signature 443 456 - -
Apr10g0860 976 SUPERFAMILY L domain-like 59 315 - -
Apr10g0860 976 Pfam Leucine rich repeat 292 333 IPR001611 GO:0005515
Apr10g0860 976 Pfam Leucine rich repeat 493 552 IPR001611 GO:0005515
Apr10g0860 976 Pfam Leucine rich repeat 129 189 IPR001611 GO:0005515
Apr10g0860 976 Pfam Leucine rich repeat 397 456 IPR001611 GO:0005515
Apr10g0860 976 Gene3D Ribonuclease Inhibitor 316 591 IPR032675 -
Apr10g0860 976 SMART LRR_sd22_2 200 223 - -
Apr10g0860 976 SMART LRR_sd22_2 296 322 - -
Apr10g0860 976 SMART LRR_sd22_2 515 541 - -
Apr10g0860 976 SMART LRR_sd22_2 443 466 - -
Apr10g0860 976 SMART LRR_sd22_2 395 421 - -
Apr10g0860 976 Gene3D Transferase(Phosphotransferase) domain 1 771 974 - -
Apr10g0860 976 ProSiteProfiles Protein kinase domain profile. 694 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g0860 976 Pfam Leucine rich repeat N-terminal domain 37 76 IPR013210 -
Apr10g0860 976 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 10 967 - -
Apr10g0860 976 ProSitePatterns Protein kinases ATP-binding region signature. 700 723 IPR017441 GO:0005524
Apr10g0860 976 SUPERFAMILY Protein kinase-like (PK-like) 693 966 IPR011009 -
Apr10g0860 976 Pfam Protein kinase domain 695 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g0860 976 CDD STKc_IRAK 700 966 - -
Apr10g0860 976 Gene3D Ribonuclease Inhibitor 36 315 IPR032675 -
Apr10g0860 976 Pfam Leucine Rich Repeat 203 224 IPR001611 GO:0005515
Apr10g0860 976 Pfam Leucine Rich Repeat 251 272 IPR001611 GO:0005515
Apr10g0860 976 PANTHER LEUCINE-RICH RECEPTOR-LIKE KINASE FAMILY PROTEIN 10 967 - -
Apr10g0860 976 Gene3D Phosphorylase Kinase; domain 1 676 770 - -
Apr10g0860 976 SUPERFAMILY RNI-like 254 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0860 Apr-Chr10 20950128 20953288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0860 21 970 Receptor kinase-like Gene Family AT5G01890 59.310 0.0 1093
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Apr10g0860 Pkinase 8.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0860 - - gmx:100791204 1646.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0860 10 20950128 20953288 Apr10g0860 10 20950128 20953288 ECH
Apr4g2141 4 30509282 30512537 Apr10g0860 10 20950128 20953288 PCT