Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0859 ATGGAGTCAAGGAGTTGCATGAACGTGGCATGCGCCACCTTAACTTCGATTCGGTGGCGCAAAGGTTGGGCCCTGCGATCCGGCGAAATCGCCGATCTCTGTGATAAGTGCGGTTCTGCTTACGAGCAATCAACATATTGTGATATGTTCCACTCAAATGATTCTGGTTGGAGAGAATGCACTTCATGTGGCAAGCGTCTCCATTGCGGATGCATTGCTTCCGTGTCTCAGCTTGAATTACTAGATACTGGTGGTGTAAGCTGTATAAGCTGTGCAAGGAGTTCAGGACACCAACCTGTTGCAAGTAATGAAAAGCCCAATGTATCTGGGACATCAAAGGTAAAAAATGTAGGTGCACAGCAGTGCAGATCTCTGGCTAACCAATTAAATGTGAGGGGTACGCAAGCAGGGCATTATGCAGAGAATGATGGGCTTAGGTGCTGGCTCAAACCCCATAATCTTGAAACAGATGGACCATCTACAGAAATGAAACCAGAAATTTTTCCTTCTGTTGGAGAACTTGGAAGCACTTTGATATCACAATTTCATTGTGAGTCTAATGGATCATTTAAGGCTTCCAAAGCAGAGAACTGTAAGGCTGACACTGACATGCGAGATATATATGAGTCATTAGCACAGACAAATTTGAGTATGACCCTTGCTGCCCCTTTAGGAAATTCAAATCCCTTTCATAGTGCTGTTGTTGATGAGAGGGAACAAAGTAAAACACCTCCTCCACTTTTGTTGGGGTCAAGGTCTCGCCATCTTTTACCTAAGCCCCCCAGGTCAACTCTTGGTACAGGCTTAGAAGCAAATGCAGGCATGGTATCCCAGATTCGTGTAGCAAGGCCTCCTGCTGAAGGACGGGGGAGGAATCAGTTGCTTCCACGTTATTGGCCTAGGATTACTGATCAAGAGCTGCAACAAATATCAGGAGATTCAAATTCCACAATTGTGCCACTCTTTGAAAAGATGCTTAGTGCAAGTGATGCTGGTCGAATTGGTCGCTTGGTTTTGCCAAAAGCATGTGCTGAAGCATATTTCCCTCCAATCTCTCAACCTGAAGGCCTTCCTTTACGAATCCAAGATGTGAAAGGAAAAGAATGGATGTTCCAATTTAGATTTTGGCCAAATAATAACAGTAGGATGTATGTTTTAGAAGGTGTAACGCCCTGCATTCAGTCTATGCAATTGCAAGCTGGAGATACTGTAACATTTAGCCGGATGGACCCTGAGGGGAAACTTATAATGGGGTTCAGGAAGGCAACAAATTCTACAGCAGTACAGTCACAAAAGGGATGTGCAGAAACCCACCTAAATGTGCTATCTAAAAACTGGAACTCAGCTGGTGGTGACATGAATTGGCATAACATTGACATGCCCGAAAACAGGAAAAGAGAGGGGCTACCTTTGCCACATGTGGTGGTTCCTGAGAAGAAAAGAACTCGGAATATTGGATCAAAAAGCAAGAGGTTACTTATTGATAGCCAGGATGCACTGGAGCTGAAACTTACTTGGGAAGAAGCTCAAGATTTGCTCCGTCCACCTCCAACTGTTAAACCAAGCATTGTTAGGATTGAGGATCATGTGTTTGAAGAATATGAAGAGCCTCCCGTCTTTGGAAAGAGGAGTATATTCGTAGTTCGATCAACCGGGGTAAATGAGCAGTGGACACAGTGTGATAGTTGCTCAAAATGGCGGAAGTTGCCAATTGATGTACTTATTCCCCCAAGGTGGACATGTATGGAGAATTTATGGGATCAGAGCAGGTGTTCATGTTCTGCTCCCAGTGAATTGAACCCAAGGGAACTGGATAATCTTCTGAGACTGAACAAAGAATTCAGGAAACAAAGATTGGCAGCAATCCACAGACCATCCCTGGAACATGAATCTTCAGGATTGGATGCTTTGGCAAATGCAGCCGTACTCGGAGATGATGCAAGTGACTCTGGCAGGACACCAGTCGTCACCACTACAAAACATCCTCGGCATAGACCTGGGTGCTCCTGCATTGTCTGTATCCAGCCACCAAGTGGGAAGGGCAAACACAAACCTACATGCACCTGTAATGTGTGCATGACAGTTAAACGTCGATTCAAAACCCTGATGATGCGAAAGAAAAAGCGTCAATCCGAACGTGAGGCAGAGATTGCTCAGAGAAATCAGTTATCATGGCGGACCAAGGATGAATCAGAAGTAGTAGACAGCACCTCTCGACATTTAACTCCAGTTGATGTTTCAGAGAATGAAGCGAGGGTGCCAAATGAGTTGGATTCTAGGAGTCAAGACCATGTGGCTGAAGCTGCCAAAGGACAATTAGACTTGAATTGCCAACCTGATCGAGACGACGTGCAGGCTGGGCCAAACAATGTGAGCATGACGAGTCTTCTTGAAGAAGCAAATCTCCCTCTTGAGACCTACCTGAAGCAAAATGGTCTTACTAGCTTGATATCAGAGCAGCAAACAAATTCAGCGTCAAATGTGCAGGCACAAACAACGAATGAGAGTGAGGGAAGACATAATGAGGATTGCGGTACTGCTTCGGTTATTCGTGAGCAGGAAAGCAGTCCTGAAGAGAACAGTGGGCAAGATAAACAAAACAATTCACCCTCATGA 2616 0.4511 MESRSCMNVACATLTSIRWRKGWALRSGEIADLCDKCGSAYEQSTYCDMFHSNDSGWRECTSCGKRLHCGCIASVSQLELLDTGGVSCISCARSSGHQPVASNEKPNVSGTSKVKNVGAQQCRSLANQLNVRGTQAGHYAENDGLRCWLKPHNLETDGPSTEMKPEIFPSVGELGSTLISQFHCESNGSFKASKAENCKADTDMRDIYESLAQTNLSMTLAAPLGNSNPFHSAVVDEREQSKTPPPLLLGSRSRHLLPKPPRSTLGTGLEANAGMVSQIRVARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWMFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSTAVQSQKGCAETHLNVLSKNWNSAGGDMNWHNIDMPENRKREGLPLPHVVVPEKKRTRNIGSKSKRLLIDSQDALELKLTWEEAQDLLRPPPTVKPSIVRIEDHVFEEYEEPPVFGKRSIFVVRSTGVNEQWTQCDSCSKWRKLPIDVLIPPRWTCMENLWDQSRCSCSAPSELNPRELDNLLRLNKEFRKQRLAAIHRPSLEHESSGLDALANAAVLGDDASDSGRTPVVTTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQRNQLSWRTKDESEVVDSTSRHLTPVDVSENEARVPNELDSRSQDHVAEAAKGQLDLNCQPDRDDVQAGPNNVSMTSLLEEANLPLETYLKQNGLTSLISEQQTNSASNVQAQTTNESEGRHNEDCGTASVIREQESSPEENSGQDKQNNSPS* 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0859 871 ProSiteProfiles Zinc finger CW-type profile. 551 601 IPR011124 GO:0008270
Apr10g0859 871 MobiDBLite consensus disorder prediction 819 871 - -
Apr10g0859 871 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 824 - -
Apr10g0859 871 SMART B3_2 322 422 IPR003340 GO:0003677
Apr10g0859 871 MobiDBLite consensus disorder prediction 819 835 - -
Apr10g0859 871 Pfam CW-type Zinc Finger 556 598 IPR011124 GO:0008270
Apr10g0859 871 SUPERFAMILY DNA-binding pseudobarrel domain 319 422 IPR015300 -
Apr10g0859 871 Gene3D - 300 427 IPR015300 -
Apr10g0859 871 CDD B3_DNA 320 421 IPR003340 GO:0003677
Apr10g0859 871 MobiDBLite consensus disorder prediction 235 268 - -
Apr10g0859 871 ProSiteProfiles B3 DNA-binding domain profile. 322 423 IPR003340 GO:0003677
Apr10g0859 871 Pfam B3 DNA binding domain 322 421 IPR003340 GO:0003677
Apr10g0859 871 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 824 - -
Apr10g0859 871 MobiDBLite consensus disorder prediction 726 764 - -
Apr10g0859 871 MobiDBLite consensus disorder prediction 848 871 - -
Apr10g0859 871 Gene3D - 554 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0859 Apr-Chr10 20919102 20927669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0859 1 841 B3 DNA Binding Superfamily AT4G32010 51.583 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Apr10g0859 B3 1.4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0859 - - gmx:100778833 1607.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0859 10 20919102 20927669 Apr10g0859 10 20919102 20927669 ECH